DreEX6050765 @ danRer10
Exon Skipping
Gene
ENSDARG00000079478 | mvb12bb
Description
multivesicular body subunit 12Bb [Source:ZFIN;Acc:ZDB-GENE-080414-2]
Coordinates
chr8:33411445-33423256:-
Coord C1 exon
chr8:33423198-33423256
Coord A exon
chr8:33421394-33421453
Coord C2 exon
chr8:33411445-33412043
Length
60 bp
Sequences
Splice sites
3' ss Seq
TCTTCTTCTTCTTTTAACAGATA
3' ss Score
11.52
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
CTATGGATGATATTCCTTTTATGGTCTCCCAAAGGCCTGCCTCCCAGAGCAAATATGAT
Seq A exon
ATAGAACCACTTCCCATCTTGAATATTTCCATCAAATCACCACAGGAGATTGAGGAGGAA
Seq C2 exon
TACAAATATTGTTTCAACACTGAACACAGCGCTGCAGCTTTCACATGGAGCCAGTGACTCGAAGACTTACCATATAACACTAGAGTAAACCAGAGTGCAGTGAGCCCACATTTACATCTACAATAATAGTTATTAAAGCTCTCGTCTACAATAAATATCAATCAGAAGAAAAAGGTTTACACTTGAGCCTTTTTTAAGTATACAGTTTTTGATTCCCCAAAGAAGCATTCGGTGAACATGTCTTTGTTTTTTAGCGTGAAAGTCATTTTAAAAATCCAAAGACATTACTTTCCACTTTAAAGAACAATCTGTGAAATTTAAACATTCCATTGATTTTCAAAAGTTCTTTATCTAACCATCAGCCAAAGTATAAAGTACCTTTATGTATTGGAAATTTGGTTATGGGCACATATTGTATGTGTGCAGTCTGATTATTTTGTGTGTATGTGCAGCTCACAATAGTGCTGTGTGTTTGTTTTGCACTACTTAGTTGGTCCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079478-'8-13,'8-11,9-13=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF102404=DUF2464=FE(7.7=100)
A:
PF102404=DUF2464=FE(8.1=100)
C2:
PF102404=DUF2464=PD(3.2=40.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCCTCCCAGAGCAAATATG
R:
TGTAAATGTGGGCTCACTGCA
Band lengths:
140-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]