RnoEX0056700 @ rn6
Exon Skipping
Gene
ENSRNOG00000017172 | Mvb12b
Description
multivesicular body subunit 12B [Source:RGD Symbol;Acc:1309709]
Coordinates
chr3:12780100-12805710:-
Coord C1 exon
chr3:12805655-12805710
Coord A exon
chr3:12802674-12802733
Coord C2 exon
chr3:12780100-12783679
Length
60 bp
Sequences
Splice sites
3' ss Seq
GACTTGGTCTATATTTTCAGATG
3' ss Score
7.75
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
CAATGGACGGTGTGCCTTTTATGATTTCAGAGAAGTTTTCCTGCATCCCAGAAAGT
Seq A exon
ATGCAGCCCTTTGATCTCTTGGGAATCACCATCAAGTCTCTGGCGGAAATTGAAAAGGAG
Seq C2 exon
TACGAGTACAGTTTCCGCACCGAGCAGAGCGCGGCAGCTCGGCTCCCACCCAGCCCTACCCGGTGCCAGCAGATCCCCCAGTCCTGAGGAGCCCACAGCCTACCCGGTGCCCAGACTACTGATGAGGTGGCTGGGGTGAGAGTCACGCCCTCCCTCACCTGCCCATTCTGCTTGCCCCTGCTCACTGACCAAGAGACTCTGGGCAGCTGCTTGGTCAGATACGGTCATCAGCTCGCCTAACGAGACTTCCCTCCCTCCCCGGGAACGTTGTTCATAATTGTGACTAATGTGTGTGCTGTTAGTGACCAGAGGCTCCTGTGTGATGACCACTTACCCCACCAAGAAAGAAAACTCCTCCCTTACCTGGAGTCACCCATGAGGGCCTGGGCACATACTCCATCCACCCAGTGACACTCACTGGCTACCCTCCAACTGACCATCACTGACCACAGAAATCCCACAAAGCCACTAGCTCCCTCCTGGAAGACTCCAGGGTTGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017172-'26-29,'26-25,27-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.768
Domain overlap (PFAM):
C1:
PF102404=DUF2464=FE(7.1=100)
A:
PF102404=DUF2464=FE(7.5=100)
C2:
PF102404=DUF2464=PD(2.8=24.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACGGTGTGCCTTTTATGA
R:
CTCAGGACTGGGGGATCTGC
Band lengths:
141-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]