HsaEX6063056 @ hg19
Exon Skipping
Gene
ENSG00000196814 | FAM125B
Description
family with sequence similarity 125, member B [Source:HGNC Symbol;Acc:23368]
Coordinates
chr9:129243648-129269320:+
Coord C1 exon
chr9:129243648-129243703
Coord A exon
chr9:129246252-129246311
Coord C2 exon
chr9:129265456-129269320
Length
60 bp
Sequences
Splice sites
3' ss Seq
AACTTCATCTGTGTTTTCAGATG
3' ss Score
8.88
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
CAATGGATGGTGTGCCTTTTATGATTTCAGAGAAGTTTTCTTGTGTTCCAGAAAGT
Seq A exon
ATGCAGCCCTTTGATCTCCTGGGAATCACCATCAAATCTCTAGCAGAAATCGAAAAAGAG
Seq C2 exon
TACGAGTACAGCTTCCGCACAGAGCAGAGCGCAGCCGCCAGGCTCCCGCCCAGCCCCACCAGGTGTCAGCAGATCCCGCAGTCCTGAGGAGCCAGCGGCCACCTGCGGGGAGACCACCGCCGCCCAGACTACTGACGGCAGGGGCTGCTGCCCCCGCCTCCTCCTGCCGCCTCCGCCAGCCCTCCCTCCCACACTGCCCCAGCAGGGCTGGCCCGGAGACTGGGCAGCTAAGTGGGCGCATCCTGTCTTCAGCTGGCCTCACTGACACCCCGGCCTCCCTGGGGACATTGTTCATAACCATGACTAATCTGTGTGTGCTGTAGTGACCAGCGGCTCCTAACGTGTCTGTGTGATGACCAGTTGTCCTCCAAAAACCTCACTCACCACGGAGTCACCCTGAGGGCCCCGGGCAGTTGCCCTGGCCGCCCAGTGACGCCCACCGGCTCCCTCCGCTCCCTCCTGTCACCTACCAGGGCAGACCCCACTAAGCCGTTGAGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196814-'16-18,'16-17,17-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.750
Domain overlap (PFAM):
C1:
PF102404=DUF2464=FE(7.1=100)
A:
PF102404=DUF2464=FE(7.5=100)
C2:
PF102404=DUF2464=PD(2.8=24.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATGGTGTGCCTTTTATGA
R:
CTCCTCAGGACTGCGGGATC
Band lengths:
144-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)