GgaEX1037652 @ galGal4
Exon Skipping
Gene
ENSGALG00000000950 | MVB12B
Description
multivesicular body subunit 12B [Source:RefSeq peptide;Acc:NP_001025848]
Coordinates
chr17:10003535-10012275:+
Coord C1 exon
chr17:10003535-10003590
Coord A exon
chr17:10005292-10005351
Coord C2 exon
chr17:10007901-10012275
Length
60 bp
Sequences
Splice sites
3' ss Seq
TTCCTTTTTTTTTCCCACAGATG
3' ss Score
13.36
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
CAATGGATGGAGTGCCTTTCATGATCTCAGAGAAGTTTGCCTGTGCTCCTGAAGGG
Seq A exon
ATGCAGCCAATTGATCTCTTGGGCATCACAATCAAAACCCTTGCAGAAATTGAAAAGGAG
Seq C2 exon
TATGACTACAGCTTCAGGACGGAGCAGAGCGCGGCAGCCCGCCTGCCGCCCAGCCCCACGCGCTGCCCGCCGGTCCCACCGTCCTGAGGGCCACCGGCGCCGGAGCGGCCGTGTGCGCGTACTACTGAGCGGGACGCGGTGCCAGGCCCCGCTGCTCCGGCCTCACCCCGCCCCGCACCGCCTCCGTACGCCCCGCTCCGCGCGTCAGACCTCGTTACCCTTCGGCAGCTGCTGCAGATGCGTCTCCACGTGAGTATGTTGCTCGGAGACTGACTGGCAGCCTCCCGGTTGCTCCCGTTCCCATATCCCCTGCTGTAGGACGGTCACAAAGCAGCCAACTGTAGCGAAGCGCTGTGCACAGCCAGCTGTGAGCTCGCAGGCCATCAGGAATGCTCGGCAGTGAGCCCTGAGAAAGAAAAAGACTCAGCCGTCAGCTGGGAGCCCCAGGCTGCACACCCAGGCCCAGCCCGCACATACCACCCCTCCTGTGGTGCTTGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000950_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.750
Domain overlap (PFAM):
C1:
PF102404=DUF2464=FE(7.1=100)
A:
PF102404=DUF2464=FE(7.5=100)
C2:
PF102404=DUF2464=PD(2.8=24.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGCCTGTGCTCCTGAAGG
R:
CAGTAGTACGCGCACACGG
Band lengths:
148-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]