DreEX6051548 @ danRer10
Exon Skipping
Gene
ENSDARG00000053196 | mtor
Description
mechanistic target of rapamycin (serine/threonine kinase) [Source:ZFIN;Acc:ZDB-GENE-030131-2974]
Coordinates
chr8:46087038-46089983:-
Coord C1 exon
chr8:46089861-46089983
Coord A exon
chr8:46087217-46087299
Coord C2 exon
chr8:46087038-46087110
Length
83 bp
Sequences
Splice sites
3' ss Seq
ACATTCCTGTCTTTTTACAGGTC
3' ss Score
12.9
5' ss Seq
CAGGTACAA
5' ss Score
7.09
Exon sequences
Seq C1 exon
ATGGCCCCTGACTATGACCATTTGACTCTAATGGAGAAGGTGGAAGTGTTTGAGCATGCAGTGAACAATACTGCAGGAGATGACCTGGCCAAACTGCTTTGGCTGAAGAGTCCCAGTTCAGAG
Seq A exon
GTCTGGTTTGACAGGAGGACCAACTACACACGCTCGCTAGCTGTTATGTCCATGGTTGGCTATATCTTAGGACTTGGAGACAG
Seq C2 exon
GCATCCTTCTAATCTGATGTTGGACAGGCTCAGTGGAAAGATACTGCATATCGATTTTGGAGACTGTTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000053196-'54-54,'54-53,55-54=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0045422=PI3_PI4_kinase=FE(15.9=100)
A:
PF0045422=PI3_PI4_kinase=FE(10.8=100)
C2:
PF0045422=PI3_PI4_kinase=FE(9.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCCCTGACTATGACCATT
R:
TGCAGTATCTTTCCACTGAGCC
Band lengths:
170-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]