RnoEX6024455 @ rn6
Exon Skipping
Gene
ENSRNOG00000009615 | Mtor
Description
mechanistic target of rapamycin kinase [Source:RGD Symbol;Acc:68371]
Coordinates
chr5:165362461-165365518:+
Coord C1 exon
chr5:165362461-165362583
Coord A exon
chr5:165364520-165364602
Coord C2 exon
chr5:165365446-165365518
Length
83 bp
Sequences
Splice sites
3' ss Seq
CATGTGCTCTTGTGCTGTAGGTG
3' ss Score
10.46
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
ATGGCTCCTGACTATGACCACCTGACTCTGATGCAGAAGGTGGAGGTGTTTGAGCATGCTGTCAACAACACAGCCGGGGATGACCTGGCCAAGCTGCTGTGGCTGAAAAGCCCCAGCTCAGAG
Seq A exon
GTGTGGTTTGACCGAAGAACCAATTATACTCGCTCCCTGGCTGTCATGTCCATGGTTGGATACATTTTAGGCCTTGGAGACAG
Seq C2 exon
GCACCCATCCAACCTGATGCTGGACCGGCTGAGTGGAAAGATCCTGCACATTGACTTTGGGGACTGCTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009615-'68-74,'68-72,69-74=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0045422=PI3_PI4_kinase=FE(15.9=100)
A:
PF0045422=PI3_PI4_kinase=FE(10.8=100)
C2:
PF0045422=PI3_PI4_kinase=FE(9.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCCTGACTATGACCACCT
R:
GCAGGATCTTTCCACTCAGCC
Band lengths:
168-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]