GgaEX1037543 @ galGal3
Exon Skipping
Gene
ENSGALG00000003339 | MTOR
Description
NA
Coordinates
chr21:4137646-4139289:-
Coord C1 exon
chr21:4139167-4139289
Coord A exon
chr21:4138820-4138902
Coord C2 exon
chr21:4137646-4137718
Length
83 bp
Sequences
Splice sites
3' ss Seq
TATTCTGTCTCTGCTTGTAGGTA
3' ss Score
10.79
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
ATGGCTCCAGATTATGACCACCTGACTTTAATGCAGAAGGTAGAAGTATTTGAACATGCTGTCAATAACACAGCTGGTGATGACCTTGCCAAACTGCTGTGGTTGAAAAGTCCAAGCTCAGAG
Seq A exon
GTATGGTTTGACAGAAGAACAAACTACACTCGTTCACTAGCTGTGATGTCAATGGTTGGGTACATTCTGGGTCTTGGGGACAG
Seq C2 exon
ACACCCTTCCAATCTGATGTTAGACAGACTGAGTGGAAAAATCCTGCATATCGACTTTGGGGACTGTTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003339-'49-51,'49-50,50-51=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0045422=PI3_PI4_kinase=FE(15.9=100)
A:
PF0045422=PI3_PI4_kinase=FE(10.8=100)
C2:
PF0045422=PI3_PI4_kinase=FE(9.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCCAGATTATGACCACCTG
R:
CCCCAAAGTCGATATGCAGGA
Band lengths:
183-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]