MmuEX0030128 @ mm10
Exon Skipping
Gene
ENSMUSG00000028991 | Mtor
Description
mechanistic target of rapamycin (serine/threonine kinase) [Source:MGI Symbol;Acc:MGI:1928394]
Coordinates
chr4:148546398-148549440:+
Coord C1 exon
chr4:148546398-148546520
Coord A exon
chr4:148547604-148547686
Coord C2 exon
chr4:148549368-148549440
Length
83 bp
Sequences
Splice sites
3' ss Seq
CATGTGCTCTGGTGCCATAGGTG
3' ss Score
8.57
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
ATGGCTCCTGACTATGACCACCTGACGTTGATGCAGAAGGTAGAGGTGTTTGAGCATGCTGTCAACAACACAGCTGGGGACGACCTGGCCAAGCTACTGTGGCTAAAAAGCCCCAGCTCGGAG
Seq A exon
GTGTGGTTTGACCGAAGAACCAACTATACCCGCTCCCTGGCCGTTATGTCGATGGTCGGATACATTTTAGGCCTTGGAGACAG
Seq C2 exon
GCACCCATCCAATCTGATGCTGGACCGGCTGAGTGGGAAGATCCTGCACATTGACTTTGGGGACTGCTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028991-'85-96,'85-95,87-96
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0045422=PI3_PI4_kinase=FE(15.9=100)
A:
PF0045422=PI3_PI4_kinase=FE(10.8=100)
C2:
PF0045422=PI3_PI4_kinase=FE(9.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCCTGACTATGACCACCT
R:
TGTGCAGGATCTTCCCACTCA
Band lengths:
171-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types