DreEX6053323 @ danRer10
Exon Skipping
Gene
ENSDARG00000057681 | si:ch211-266o15.1
Description
si:ch211-266o15.1 [Source:ZFIN;Acc:ZDB-GENE-131127-116]
Coordinates
chr17:14747778-14750685:-
Coord C1 exon
chr17:14750314-14750685
Coord A exon
chr17:14748156-14748306
Coord C2 exon
chr17:14747778-14747950
Length
151 bp
Sequences
Splice sites
3' ss Seq
ATATTTCTTTTCTTTCTCAGGGT
3' ss Score
10.81
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
GAGAAGCTAAACTCTCCTGTGCCTCATAATCAGATGAATGGTACTTCACATACACCCCAGCCCCAGAGTGCCGTTCCCCCTCCACCTCGTCCCACTGCTGACCATCTCCAGCCCATTCAAAACTCATCCAGCACAAGCCACAATCCTCCTCCTCCTCCTCCTCCTCTTCCACCTCCTCCACCATTTGTACCACCATCAAACCCAAATCCAGTTCCCACATACGTGCCTGCTCCTGGTGTGATGAACTCGCAGGACACCCAGCAGCAGCAGCAGTGGCCGAGCAAACCTCCCTCGTCCTCAGACCCGATGCGACTGACATGCAGACAGTGCCAGAACCACTTCAGCTCCAAGCCTGAGGTCTTCCAGTTCAAG
Seq A exon
GGTCATGCAGGTTTGTTCTGTTCGCGAGCGTGCTGTGACACATATAAGAAGGAAGGCAACGTAAAAGCTTTATGCGAGTACTGCAAACTAGAGAAAGTGGTCAAAGACATTATTACATACGAAAAACAGCCCAGATCTTTCTGTTGTGAAG
Seq C2 exon
GCTGTAAACTTCTTTTCAAGCATGAGCTTGCCAAACGACATGGAGGTCAATGCCGGGTTTGTGCCTACTGTCAAAACATGACCCACAAAACCATTCAGAACTTTTTTGGGGGGAAACTGGAGGAGTTTTGCACAGAGGAATGCATGTCGCTCTACACTGTCCTCTTTTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057681-'13-23,'13-22,15-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.790 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PU(56.8=16.9)
A:
PF064679=zf-FCS=PD(37.8=27.5),PF064679=zf-FCS=PU(85.0=66.7)
C2:
PF064679=zf-FCS=PD(12.5=8.6),PF064679=zf-FCS=WD(100=69.0),PF064679=zf-FCS=PU(2.5=1.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACCTCCTCCACCATTTGT
R:
GACCTCCATGTCGTTTGGCAA
Band lengths:
253-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]