GgaEX1000553 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr23:4311484-4333315:-
Coord C1 exon
chr23:4333274-4333315
Coord A exon
chr23:4313185-4313335
Coord C2 exon
chr23:4311484-4311619
Length
151 bp
Sequences
Splice sites
3' ss Seq
ACATTCTGACTGTGTTGCAGGGT
3' ss Score
8.75
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
ATGGCGGAGGCCAAGGAGGAGGGGCCCGGCCCCTGCGCCAGG
Seq A exon
GGTAAAATGTTCCAGTTTTGTGGGAAGACCTGCTGTGATGAATATAAGAAGAGGAGGAGTGTAACAGCACTGTGTGAATATTGCAGAACTGAGAAGATCATCAAGGAGACAGTGCGAATCGCAGGCATAGATAAGCCATTCTGTAGTGAAG
Seq C2 exon
GGAATGAAATGCAAAGGGAAGAAAGGAAGAAAGGCGCACAAAGACAGGAAGAGGAAGCGAAACAAAGGGCAGAAATAGCACTGATCCTAAAGAGGGGCATGTTCTCCCAGAGAGTGATGGTGACTGCAACAGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002499_MULTIEX1-13/24=C1-16
Average complexity
C3
Mappability confidence:
94%=100=94%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.857 A=0.000 C2=0.391
Domain overlap (PFAM):
C1:
NO
A:
PF064679=zf-FCS=PD(35.0=27.5),PF064679=zf-FCS=PU(85.0=66.7)
C2:
NO
Main Skipping Isoform:
ENSGALT00000003942fB3804
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGCCAAGGAGGAGGG
R:
ACTGTTGCAGTCACCATCACT
Band lengths:
170-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]