GgaEX1000553 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr23:4682357-4683682:-
Coord C1 exon
chr23:4683410-4683682
Coord A exon
chr23:4682785-4682935
Coord C2 exon
chr23:4682357-4682529
Length
151 bp
Sequences
Splice sites
3' ss Seq
ACATTCTGACTGTGTTGCAGGGT
3' ss Score
8.75
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
AATTTGTTCAACAAACCTGCAGGAGTGAACTCCTCGGTCGTACCCCTGTCGCAAGGTCAAGTCATTGTAAGCATTCCCTCGGGGACAACGGTGTCAGCAGGTGGCACCACCTCCACTGCATCTCCCAGCTCCGGGAGCAGTTCAGCTGCAGCTGGTCTACAGAGGCTGGCTGCCCAGTCCCAGCAAGTCACTTTTGCCCGCAAGGTTGTAAAACTCTGGTGTCAGCACTGTAACAGATTATTTGCAACCAAACCAGAACTGCTTGACTTCAAG
Seq A exon
GGTAAAATGTTCCAGTTTTGTGGGAAGACCTGCTGTGATGAATATAAGAAGAGGAGGAGTGTAACAGCACTGTGTGAATATTGCAGAACTGAGAAGATCATCAAGGAGACAGTGCGAATCGCAGGCATAGATAAGCCATTCTGTAGTGAAG
Seq C2 exon
GTTGTAAATTGCTCTATAAACATGACTTGGCTAAGCGCTGGGGAAACCACTGTAAAATGTGCAGTTACTGTTTGCAGACTTCCCCCAAACTGGTCCAGAATCTCTTCGGGGGGAGAATGGAGGAATTCTGCTCAGAAGAGTGCATGTCTAAATTCACAGTTTTGTTTTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002499-'16-16,'16-15,17-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PU(60.0=26.4)
A:
PF064679=zf-FCS=PD(35.0=27.5),PF064679=zf-FCS=PU(85.0=66.7)
C2:
PF064679=zf-FCS=PD(12.5=8.6),PF064679=zf-FCS=WD(100=69.0),PF064679=zf-FCS=PU(2.7=1.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCCACTGCATCTCCCAG
R:
TTGGGGGAAGTCTGCAAACAG
Band lengths:
253-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]