RnoEX0102042 @ rn6
Exon Skipping
Gene
ENSRNOG00000012397 | Zmym4
Description
zinc finger MYM-type containing 4 [Source:RGD Symbol;Acc:1309545]
Coordinates
chr5:144917974-144919690:-
Coord C1 exon
chr5:144919412-144919690
Coord A exon
chr5:144918829-144918979
Coord C2 exon
chr5:144917974-144918146
Length
151 bp
Sequences
Splice sites
3' ss Seq
TACTCAATATTTCTTTACAGGGT
3' ss Score
7.86
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
AACTTGTTTAACAAACCAACTGGAATGAATTCTTCAGTAGTGCCCTTGTCTCAGGGCCAGGTGATCGTGAGCATCCCCACTGGTTCATCAGCATCCGCAGGGGGAGGGAGTACCCCAGCTGCCTCCCCCACCTCTGTCCACAGCTCCTCTGCGGCTGCTGGGCTCCAGAGGCTGGCTGCCCAGTCCCAGCATGTTGGCTTTGCACGAAGTGTGGTGAAGCTTAGGTGTCAACATTGTAACCGTCTCTTTGCCACAAAGCCAGAGCTTCTTGACTACAAG
Seq A exon
GGTAAAATGTTTCAGTTCTGTGGCAAGAATTGTTCTGATGAATATAAGAAAATCAATAATGTAATGGCAATGTGTGAATACTGTAAAATTGAGAAAATTATAAAGGAGACTGTGAGGTTCTCAGGTGCTGACAAGTCATTTTGTAGTGAAG
Seq C2 exon
GTTGCAAATTGCTTTATAAACATGACTTGGGAAAACGCTGGGGAAGTCATTGTAAAATGTGCAGTTACTGTTTACAGACCTCTCCCAAACTAATACAGAATAATTTGGGTGGAAAGGTGGAAGACTTCTGTTGTGAAGAATGCATGTCTAAGTATACAGTTCTGTTTTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012397-'30-25,'30-23,31-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.075 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PU(61.0=26.9)
A:
PF064679=zf-FCS=PD(34.1=27.5),PF064679=zf-FCS=PU(85.0=66.7)
C2:
PF064679=zf-FCS=PD(12.5=8.6),PF064679=zf-FCS=WD(100=69.0),PF064679=zf-FCS=PU(2.7=1.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCACTGGTTCATCAGCATCC
R:
ATGACTTCCCCAGCGTTTTCC
Band lengths:
254-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]