DreEX6073950 @ danRer10
Exon Skipping
Gene
ENSDARG00000035823 | zmym4
Description
zinc finger, MYM-type 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5459]
Coordinates
chr19:40498612-40502081:+
Coord C1 exon
chr19:40498612-40498815
Coord A exon
chr19:40499533-40499683
Coord C2 exon
chr19:40501906-40502081
Length
151 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTCCTGACCTTTCAGAGG
3' ss Score
9.87
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
GAGTCATTTGGTAAGAAACCAAACTACCAGGTGAACACTGTAACCTCTACGACGAATGCATCAACGCCAAAACCTGCCTCTTCAGAGTCCAGCTCCTCAACCAAGACAAGCACTTCCAAGAGTCAAGTTCAGAACGTCACAAAGATCCCCTGCTCACAGTGTCTCAACTCATTCTTCCACAAACCAGAACTGCTGGATTTTAAG
Seq A exon
AGGAAAATGTACGCTTTCTGCGGTACGGCTTGTGTTGAGGAGTTCAAGCAGATCAACAACGTCATGGCTCGCTGCGAATACTGCAAGATTGACAAAATTATCAAGGAGGTGAAAAGGATCAACAAAATTGACCGATCTTTCTGCAGTGAGG
Seq C2 exon
GATGCAGGTTACTCTATAAGCATGACCTGGTGAAGCGCTGGGGGAAGAAACACTGTCGCAATTGTTTGTACTGCAGCGGCTCGGCTCAAACCGTAGTCAGCGCAATCATTAATAATGTTGAGGAGGAGTTCTGTGGGACCATGTGCTTATCGCTTCATACCTCATTATTGCGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035823-'12-20,'12-18,13-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.371 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PU(60.0=35.3)
A:
PF064679=zf-FCS=PD(35.0=27.5),PF064679=zf-FCS=PU(85.0=66.7)
C2:
PF064679=zf-FCS=PD(12.5=8.5),PF064679=zf-FCS=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGCTCCTCAACCAAGACA
R:
GTCCCACAGAACTCCTCCTCA
Band lengths:
256-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]