DreEX6053329 @ danRer10
Exon Skipping
Gene
ENSDARG00000057681 | si:ch211-266o15.1
Description
si:ch211-266o15.1 [Source:ZFIN;Acc:ZDB-GENE-131127-116]
Coordinates
chr17:14726665-14731320:-
Coord C1 exon
chr17:14731169-14731320
Coord A exon
chr17:14729085-14729199
Coord C2 exon
chr17:14726665-14726913
Length
115 bp
Sequences
Splice sites
3' ss Seq
TATCTTCACTCAATTTGTAGTGC
3' ss Score
6.98
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
Exon sequences
Seq C1 exon
CAGAGCCCATGACCATGAAGGAGGATGTGTTGCAGTGCTCGTCTGCAGATCTCAGTTATGGTCTGTGCCGCTTTATCAAGGAGGTTCGCAGGCCGAATGGAGAAGAATATCAACCCGACAGCATCTACTACCTGTGCCTGGGCATTCAGCAG
Seq A exon
TGCCTGCTTGAAAACGAGCGTCTTGAGAACATCTTCACAGACCCACTGTATAATCAGTTCATCACCGACATCACCACACTGCTCAAGGACTGGGTCAACAAAGTGTCACCTGGAG
Seq C2 exon
GATACATGCACTCGCGGGTGGAGGAGGAATACCTCTGGGAGTGTAAGCAGTTGGGAGCTCTGTCTCCTATTGTTCTGCTTAACACGCTGCTGTTTTTCGGATCCAAACTGCTCAACCTGAAAACGGTTGAAGAGCATCGACGGCTCGCCTTTTCCAATGTCTCCCACTGCTCCAAGACCACCAAAAGTGGCTTGACCTCTTACCTTCGCTTTAGGCTACCTAACAAAGAGGAGGAAAAAGAGAAGAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057681-'27-40,'27-39,28-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.163 A=0.000 C2=0.071
Domain overlap (PFAM):
C1:
NO
A:
PF120123=DUF3504=PU(0.1=0.0)
C2:
PF120123=DUF3504=PU(48.3=98.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCCCATGACCATGAAGGA
R:
AGCAGCGTGTTAAGCAGAACA
Band lengths:
242-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]