HsaEX0072919 @ hg38
Exon Skipping
Gene
ENSG00000146463 | ZMYM4
Description
zinc finger MYM-type containing 4 [Source:HGNC Symbol;Acc:HGNC:13055]
Coordinates
chr1:35408008-35415714:+
Coord C1 exon
chr1:35408008-35408159
Coord A exon
chr1:35413972-35414083
Coord C2 exon
chr1:35415466-35415714
Length
112 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTTTTTTTCTTGTAGTAC
3' ss Score
8.78
5' ss Seq
ATGGTAGGG
5' ss Score
5.88
Exon sequences
Seq C1 exon
TCCGCTCTATCAAGCTGAAGGAAGACATTCTGTCCTGCACTTTTGCTGAGTTGAGTTTGGGCTTATGCCAGTTTATCCAAGAGGTGCGGAGACCAAATGGTGAAAAATATGATCCAGACAGTATCTTATACTTGTGCCTTGGAATTCAACAG
Seq A exon
TACCTGTTTGAAAATGGTAGAATAGATAACATTTTTACTGAGCCCTATTCCAGATTTATGATTGAACTTACCAAACTCTTGAAAATATGGGAACCTACAATACTTCCTAATG
Seq C2 exon
GTTACATGTTCTCTCGCATTGAGGAAGAGCATTTGTGGGAGTGCAAACAGCTGGGCGCTTACTCACCAATCGTCCTTTTAAACACCCTCCTTTTCTTCAATACCAAATACTTCCAACTAAAGAATGTTACTGAGCACTTGAAGCTTTCCTTTGCCCATGTGATGAGACGGACCAGGACTCTGAAGTACAGTACCAAGATGACATATCTGAGGTTCTTCCCACCTTTACAGAAGCAGGAGTCAGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146463_MULTIEX1-4/4=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.018
Domain overlap (PFAM):
C1:
NO
A:
PF120123=DUF3504=PU(0.1=0.0)
C2:
PF120123=DUF3504=PU(47.7=98.8)
Main Skipping Isoform:
ENST00000314607fB30572
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCCAAGAGGTGCGGAGACC
R:
CCGTCTCATCACATGGGCAAA
Band lengths:
249-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development