HsaEX6029935 @ hg38
Exon Skipping
Gene
ENSG00000146463 | ZMYM4
Description
zinc finger MYM-type containing 4 [Source:HGNC Symbol;Acc:HGNC:13055]
Coordinates
chr1:35399482-35414083:+
Coord C1 exon
chr1:35399482-35399576
Coord A exon
chr1:35405023-35405194
Coord C2 exon
chr1:35413972-35414083
Length
172 bp
Sequences
Splice sites
3' ss Seq
AATTTTTGGAATTCTTACAGGGA
3' ss Score
6.09
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
ACTCCTTTGACCCACTTAATAAAGGACAGGGAATCCAGGCACGTTCCCGAACAAGACGACGACACAGAGATGGCTTCCCCCAACCCAGACGAAGA
Seq A exon
GGACGGAAGAAGTCTATAGTGGCTGTGGAGCCCAGGAGTCTTATTCAAGGAGCCTTTCAAGGCTGCTCAGTGTCCGGGATGACACTGAAATACATGTATGGGGTAAATGCTTGGAAGAACTGGGTTCAGTGGAAAAATGCCAAGGAAGAGCAGGGGGATCTAAAATGTGGAG
Seq C2 exon
TACCTGTTTGAAAATGGTAGAATAGATAACATTTTTACTGAGCCCTATTCCAGATTTATGATTGAACTTACCAAACTCTTGAAAATATGGGAACCTACAATACTTCCTAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146463_MULTIEX1-1/4=C1-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.190 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF120123=DUF3504=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGACCCACTTAATAAAGGACAGGG
R:
CATTAGGAAGTATTGTAGGTTCCCA
Band lengths:
202-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains