RnoEX6023378 @ rn6
Exon Skipping
Gene
ENSRNOG00000012397 | Zmym4
Description
zinc finger MYM-type containing 4 [Source:RGD Symbol;Acc:1309545]
Coordinates
chr5:144896345-144904319:-
Coord C1 exon
chr5:144904225-144904319
Coord A exon
chr5:144896567-144896738
Coord C2 exon
chr5:144896345-144896440
Length
172 bp
Sequences
Splice sites
3' ss Seq
AATTTTTGGAATTCTCACAGGGG
3' ss Score
5.21
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
AATCTTTTGACCCACTTAATAAAGGACAGGGAATCCAGGCGCGTTCTCGAACAAGACGAAGACACAGAGATGGCTTCCCCCAGCCCAGACGACGA
Seq A exon
GGGAGGAAGAAGTCTGTCGTACCTGTGGAGCCCAGGAGTCTTATCCAAGGAGCCCTGCAAGGCTGTTCTGTGTCTGGGATGACACTGAAGTATATGTATGGGGTAAATGCCTGGAAGAACTGGGTTCAATGGAAAAATGCCAAGGATGAACAAGGAGATCTGAAGTGTGGGG
Seq C2 exon
GAGGTGAACATGCCTCTGCTAGTCCCTGTTCTGACTCCTTAGGAAGTGCCCAGGACCAGGCTCTCTCTCAAGAATCCTCAGAGCAAGGCTGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012397-'45-47,'45-46,47-47=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.176 C2=0.303
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGACCCACTTAATAAAGGACAGGG
R:
CTTTACAGCCTTGCTCTGAGGA
Band lengths:
186-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]