MmuEX6096146 @ mm10
Exon Skipping
Gene
ENSMUSG00000042446 | Zmym4
Description
zinc finger, MYM-type 4 [Source:MGI Symbol;Acc:MGI:1915035]
Coordinates
chr4:126882215-126889609:-
Coord C1 exon
chr4:126889515-126889609
Coord A exon
chr4:126882440-126882611
Coord C2 exon
chr4:126882215-126882310
Length
172 bp
Sequences
Splice sites
3' ss Seq
ATTTTTTGGAATTCTCACAGGGG
3' ss Score
6.22
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
AATCTTTTGACCCACTTAATAAAGGACAGGGGATCCAGGCACGTTCTCGAACAAGACGAAGACACAGAGATGGATTCCCCCAGCCCAGACGGCGA
Seq A exon
GGGAGGAAGAAGTCTGTGGTACCTGTGGAACCCAGAAGTCTTATTCAAGGAGCCTTGCAAGGGTGCTCAGTGTCTGGAATGACACTGAAGTATATGTATGGGGTAAATGCCTGGAAGAACTGGGTTCAGTGGAAAAATGCCAAGGATGAACAAGGAGATCTGAAGTGCGGGG
Seq C2 exon
GAGGTGAACTTGCCTCTGCTAGTCCGTGTTCTGACTCCTTAGGAAGTGCTCAAGACCATGCCCTCTCTCAAGAATCCTCAGAGCAAGGCTGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042446-'51-50,'51-49,56-50=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.194 C2=0.091
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGACCCACTTAATAAAGGACAGGG
R:
CTTTACAGCCTTGCTCTGAGGA
Band lengths:
186-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types