BtaEX6019008 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021023 | ZMYM4
Description
zinc finger, MYM-type 4 [Source:HGNC Symbol;Acc:HGNC:13055]
Coordinates
chr3:110937488-110946090:-
Coord C1 exon
chr3:110945996-110946090
Coord A exon
chr3:110937768-110937939
Coord C2 exon
chr3:110937488-110937583
Length
172 bp
Sequences
Splice sites
3' ss Seq
ATTTTTGGAAATTCTTACAGGGA
3' ss Score
6.03
5' ss Seq
GCGGTAAAT
5' ss Score
6.76
Exon sequences
Seq C1 exon
AATCCTTTGACCCATTAAACAAGGGACAGGGAATCCAGGTACGTTCCCGAACGAGAAGACGACACAGAGACGGCTTCCCCCAGCCCAGACGAAGA
Seq A exon
GGACGGAAGAAGTCTATAGTATCTGTGGAGCCCAGGAGTCTTATTCAAGGAGCCTTTCAAGGGTGCTCAGTGTCTGGGATGACATTGAAATACATGTATGGGGTAAACGCCTGGAGGAACTGGGTTCAGTGGAAAAATGCCAAGGAAGAGCAGGGGGACCTGAAGTGTGGCG
Seq C2 exon
GAGTTGAACATGCCTCATCTAGCCCGTGTTCTGACCCATTAGGAAGTACTCAAGAGCATGCACTCTCTCAAGAATCTTCAGAGCCAGGCTGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021023-'28-31,'28-30,29-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.155 C2=0.394
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTTTGACCCATTAAACAAGGGA
R:
ACAGCCTGGCTCTGAAGATTC
Band lengths:
186-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]