GgaEX6025133 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr23:4674232-4676079:-
Coord C1 exon
chr23:4675985-4676079
Coord A exon
chr23:4675491-4675662
Coord C2 exon
chr23:4674232-4674321
Length
172 bp
Sequences
Splice sites
3' ss Seq
CTTTGTTTGTTTTCCTACAGGGA
3' ss Score
11.75
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
ACTCATTTGACCCTCTCAGTAAGGGACTGGGTTTGCATTCACGTTCACGAGCAAGACGGAGGCACAGAGATGGCTTCCCCCAGCCAAAGAGACGG
Seq A exon
GGACGAAAGAAGTCTGTAGTTGCTGTAGAGCCCCGCAATCTGATGCAGGGCTCCTACCCAGGATGCTCTGTTTCTGGGATGACCCTAAAGTATATGTATGGGGTAAATGCCTGGAAGAACTGGGTCCAATGGAAAAATGCACAGGAGGAGCAAGGGGACCTGAAGTTTTCAG
Seq C2 exon
GAGTCGAATACTCTGTGCTCAGCTTGTGCCCAGAACTACTAGGAAATATTCAGGATCTTTTTCTCACTCAAGATTCCCGAGTCCAGCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002499-'29-32,'29-31,30-32=AN
Average complexity
A_C3
Mappability confidence:
88%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.844 A=0.138 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGACCCTCTCAGTAAGGGAC
R:
AGCTGGACTCGGGAATCTTGA
Band lengths:
178-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]