DreEX6053327 @ danRer10
Exon Skipping
Gene
ENSDARG00000057681 | si:ch211-266o15.1
Description
si:ch211-266o15.1 [Source:ZFIN;Acc:ZDB-GENE-131127-116]
Coordinates
chr17:14731169-14739736:-
Coord C1 exon
chr17:14739642-14739736
Coord A exon
chr17:14731469-14731613
Coord C2 exon
chr17:14731169-14731317
Length
145 bp
Sequences
Splice sites
3' ss Seq
CGTTTCTATGTGTCACCCAGGGT
3' ss Score
6.05
5' ss Seq
CTCGTAAGT
5' ss Score
9.63
Exon sequences
Seq C1 exon
CAACGGCTGACCCCGGATCAGCAAAAGAGAACAGACTGGTGTTGACGCTGAAGAGACGTAAGAGGGGCAGAGATGGCCACCCTCCTAGGAAAAGG
Seq A exon
GGTCGTAAGCGATCTGGAACGGACACGTCGAGCAGTGTTTGGCTCAGTACCTCCAGCTCCAAGCTCAACCAAACGTACGGCGTTGAAGCCTGGGCCAGCTGGGTGCGAATGAAAAGAGGCCACGCTGAGCAGGAGCAGCAGGCTC
Seq C2 exon
AGCCCATGACCATGAAGGAGGATGTGTTGCAGTGCTCGTCTGCAGATCTCAGTTATGGTCTGTGCCGCTTTATCAAGGAGGTTCGCAGGCCGAATGGAGAAGAATATCAACCCGACAGCATCTACTACCTGTGCCTGGGCATTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057681-'25-38,'25-35,26-38=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.571 C2=0.134
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCCGGATCAGCAAAAGAG
R:
GCCCAGGCACAGGTAGTAGAT
Band lengths:
227-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]