DreEX6073946 @ danRer10
Exon Skipping
Gene
ENSDARG00000035823 | zmym4
Description
zinc finger, MYM-type 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5459]
Coordinates
chr19:40517712-40521115:+
Coord C1 exon
chr19:40517712-40518353
Coord A exon
chr19:40519772-40519925
Coord C2 exon
chr19:40520964-40521115
Length
154 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTTGTTGACATATAGGCT
3' ss Score
6.56
5' ss Seq
GCTGTAGGT
5' ss Score
3.41
Exon sequences
Seq C1 exon
AGCTGCACCACTGCAAGGAGGTTTATGAGACCACCAAAGCAGCTCTGACCGATCTGAAAAGCTCTCATAAGGGGCTCGTGGAGGCACACATGGCTGTGGTTCTGCAACTGAGAGATGCACTGGACAAAAAACAACCACTACGGACCCAGCGTCATAGTTCATGCAGTCAAGATGATATGATGCAAACAAAGTCCTGCCATCCCAATTTCGACTTTCATCCTCCCTCAAAGCAGCAGTTGAACGCCCTGTTTAATCAGAGTCAGAAGCGTGCGGATCGTTACGGATGCCTGCTATTTCGTGTCATTGTACCTCAAACCAAGTATAAAGAATGGGCGTCCAATACCAACTGGGATGGCTCAAGGGGTAAATGCGCATTGCCGGTAAACCTGCGGAGCTTCATCATTGATACGGTTTCTCAGAGATTCCCCGGCTTGAGTGATGTTGACCGGAAATGCATTAAAGACAGAATCAATGAGTTCTTGCGCTCGCCAAGAAACACG
Seq A exon
GCTCGTAAGACTGCAGCAGAGCTTCCAGCCAAATCAGCTCCAGAAAACCTCTCTAACATCTCTAAACTACAACACGAGTACGGAGTCACCGCCTGGAGGGACTGGGTGCGCTGGAGGAACGCTCAGCCCAACATGGAGACTCCCAAATTTGGCT
Seq C2 exon
CACGCAGCATGACACTGAAGGAGGACCTGTTGAAATGTTGCACCGCTGAGATAAGCTACGGTCTCTGTAAGTTCATCACTGAAGTCCGGCGACCCAATGGAGAGAAATACAGTCCTGACAGCATCTATTACCTCTGCTTGGGCATCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035823-'27-36,'27-35,28-36=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.262 A=0.269 C2=0.000
Domain overlap (PFAM):
C1:
PF105234=BEN=PU(97.4=35.0)
A:
PF105234=BEN=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGATGCCTGCTATTTCGTGT
R:
CCTCCTTCAGTGTCATGCTGC
Band lengths:
244-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]