HsaEX6029936 @ hg38
Exon Skipping
Gene
ENSG00000146463 | ZMYM4
Description
zinc finger MYM-type containing 4 [Source:HGNC Symbol;Acc:HGNC:13055]
Coordinates
chr1:35398864-35405194:+
Coord C1 exon
chr1:35398864-35399043
Coord A exon
chr1:35399482-35399576
Coord C2 exon
chr1:35405023-35405194
Length
95 bp
Sequences
Splice sites
3' ss Seq
CTTTCTGCTGATTATTATAGACT
3' ss Score
6.35
5' ss Seq
AGAGTAAGC
5' ss Score
6.31
Exon sequences
Seq C1 exon
ACCAAGGAAGTACATACAGTGGTGATCTTGAATCAGAGGCAGTATCTACTCCACATAGCTGGGAGGAAGAGCTGAATCACTATGCCTTAAAGTCAAATGCTGTGCAAGAGGCTGATTCAGAATTGAAGCAGTTCTCAAAAGGGGAAACTGAACAGGACCTGGAAGCAGATTTTCCATCAG
Seq A exon
ACTCCTTTGACCCACTTAATAAAGGACAGGGAATCCAGGCACGTTCCCGAACAAGACGACGACACAGAGATGGCTTCCCCCAACCCAGACGAAGA
Seq C2 exon
GGACGGAAGAAGTCTATAGTGGCTGTGGAGCCCAGGAGTCTTATTCAAGGAGCCTTTCAAGGCTGCTCAGTGTCCGGGATGACACTGAAATACATGTATGGGGTAAATGCTTGGAAGAACTGGGTTCAGTGGAAAAATGCCAAGGAAGAGCAGGGGGATCTAAAATGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146463-'74-67,'74-63,75-67
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.880 A=1.000 C2=0.190
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGGGAGGAAGAGCTGAAT
R:
TAAGACTCCTGGGCTCCACAG
Band lengths:
167-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains