BtaEX6019007 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021023 | ZMYM4
Description
zinc finger, MYM-type 4 [Source:HGNC Symbol;Acc:HGNC:13055]
Coordinates
chr3:110937768-110946679:-
Coord C1 exon
chr3:110946500-110946679
Coord A exon
chr3:110945996-110946090
Coord C2 exon
chr3:110937768-110937939
Length
95 bp
Sequences
Splice sites
3' ss Seq
CTTTCTCCTGGTTGTCACAGAAT
3' ss Score
7.82
5' ss Seq
AGAGTAAGC
5' ss Score
6.31
Exon sequences
Seq C1 exon
ACCAAGGAAGTACTTACAGTGGTGATCTTGAATCAGAGGCAGTATCTACTCCACATAGCTGGGAGGAAGAATTAAATCATTATGCCTTAAAGTCAAATACTGTGCAAGAGGCTGATTTAGAAGTGAAGCAGTTCTCAAAAGGGGAAACTGAACAGGATCTGGAAGCAGATTTCCCCTCAG
Seq A exon
AATCCTTTGACCCATTAAACAAGGGACAGGGAATCCAGGTACGTTCCCGAACGAGAAGACGACACAGAGACGGCTTCCCCCAGCCCAGACGAAGA
Seq C2 exon
GGACGGAAGAAGTCTATAGTATCTGTGGAGCCCAGGAGTCTTATTCAAGGAGCCTTTCAAGGGTGCTCAGTGTCTGGGATGACATTGAAATACATGTATGGGGTAAACGCCTGGAGGAACTGGGTTCAGTGGAAAAATGCCAAGGAAGAGCAGGGGGACCTGAAGTGTGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021023-'26-30,'26-28,28-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.803 A=1.000 C2=0.155
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCCACATAGCTGGGAGGAA
R:
ACTCCTGGGCTCCACAGATAC
Band lengths:
172-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]