GgaEX1000562 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr23:4675491-4676768:-
Coord C1 exon
chr23:4676589-4676768
Coord A exon
chr23:4675985-4676079
Coord C2 exon
chr23:4675491-4675662
Length
95 bp
Sequences
Splice sites
3' ss Seq
TGGTGTTGATTTGACTTCAGACT
3' ss Score
3.5
5' ss Seq
CGGGTAAGA
5' ss Score
9.84
Exon sequences
Seq C1 exon
ACCAAGGTAGCACTTACAGTGGAGATCTAGAATCAGAAGCAGTGTCCACTCCACACAGCTGGGAAGAAGAGTTAAATCACTATGCCTTACGATCAAATGCCCTGCCAGAACCAGATCCAGAACCGAAGCAGATCTCCAAAGGTGAAGTGGAACAGGACCTGGAAGCAGATTTTCCGTCAG
Seq A exon
ACTCATTTGACCCTCTCAGTAAGGGACTGGGTTTGCATTCACGTTCACGAGCAAGACGGAGGCACAGAGATGGCTTCCCCCAGCCAAAGAGACGG
Seq C2 exon
GGACGAAAGAAGTCTGTAGTTGCTGTAGAGCCCCGCAATCTGATGCAGGGCTCCTACCCAGGATGCTCTGTTTCTGGGATGACCCTAAAGTATATGTATGGGGTAAATGCCTGGAAGAACTGGGTCCAATGGAAAAATGCACAGGAGGAGCAAGGGGACCTGAAGTTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002499-'28-31,'28-29,29-31=AN
Average complexity
A_S
Mappability confidence:
88%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.967 A=0.844 C2=0.138
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACACAGCTGGGAAGAAGA
R:
CATCAGATTGCGGGGCTCTAC
Band lengths:
176-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]