MmuEX0053934 @ mm10
Exon Skipping
Gene
ENSMUSG00000042446 | Zmym4
Description
zinc finger, MYM-type 4 [Source:MGI Symbol;Acc:MGI:1915035]
Coordinates
chr4:126882440-126890175:-
Coord C1 exon
chr4:126889996-126890175
Coord A exon
chr4:126889515-126889609
Coord C2 exon
chr4:126882440-126882611
Length
95 bp
Sequences
Splice sites
3' ss Seq
CTTTCTGCTGCTTTTTTCAGAAT
3' ss Score
10.86
5' ss Seq
CGAGTAAGC
5' ss Score
6.91
Exon sequences
Seq C1 exon
ACCAAGGAAGTACATATAGTGGTGATCTTGAGTCAGAAGCAGTATCAACTCCACACAGCTGGGAAGAAGAGCTGAATCATTACGCATTAAAGTCGAATGCTGTGCAAGATGCTGATTCAGAACTGAAACCGTTTTCAAAAGGGGAAACAGAGCAGGATCTGGAGGCAGACTTCCCATCAG
Seq A exon
AATCTTTTGACCCACTTAATAAAGGACAGGGGATCCAGGCACGTTCTCGAACAAGACGAAGACACAGAGATGGATTCCCCCAGCCCAGACGGCGA
Seq C2 exon
GGGAGGAAGAAGTCTGTGGTACCTGTGGAACCCAGAAGTCTTATTCAAGGAGCCTTGCAAGGGTGCTCAGTGTCTGGAATGACACTGAAGTATATGTATGGGGTAAATGCCTGGAAGAACTGGGTTCAGTGGAAAAATGCCAAGGATGAACAAGGAGATCTGAAGTGCGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042446-'49-49,'49-47,51-49
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.898 A=1.000 C2=0.194
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAATGCTGTGCAAGATGCT
R:
CATTCCAGACACTGAGCACCC
Band lengths:
169-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types