RnoEX6023377 @ rn6
Exon Skipping
Gene
ENSRNOG00000012397 | Zmym4
Description
zinc finger MYM-type containing 4 [Source:RGD Symbol;Acc:1309545]
Coordinates
chr5:144896567-144904898:-
Coord C1 exon
chr5:144904719-144904898
Coord A exon
chr5:144904225-144904319
Coord C2 exon
chr5:144896567-144896738
Length
95 bp
Sequences
Splice sites
3' ss Seq
CTTTCTGCTGGTTTTTACAGAAT
3' ss Score
9.59
5' ss Seq
CGAGTAAGC
5' ss Score
6.91
Exon sequences
Seq C1 exon
ACCAAGGAAGTACGTATAGTGGTGACCTCGAGTCCGAGGCAGTATCAACCCCACATAGCTGGGAAGAAGAACTGAATCATTACGCCTTAAAGTCGAATGCTGTGCAAGATGCTGATTCAGAACTGAAACAGTTCTCCAAAGGGGAAACAGAACAGGATCTGGAGGCAGATTTTCCATCAG
Seq A exon
AATCTTTTGACCCACTTAATAAAGGACAGGGAATCCAGGCGCGTTCTCGAACAAGACGAAGACACAGAGATGGCTTCCCCCAGCCCAGACGACGA
Seq C2 exon
GGGAGGAAGAAGTCTGTCGTACCTGTGGAGCCCAGGAGTCTTATCCAAGGAGCCCTGCAAGGCTGTTCTGTGTCTGGGATGACACTGAAGTATATGTATGGGGTAAATGCCTGGAAGAACTGGGTTCAATGGAAAAATGCCAAGGATGAACAAGGAGATCTGAAGTGTGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012397-'44-46,'44-44,45-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.885 A=1.000 C2=0.176
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAATGCTGTGCAAGATGCT
R:
CATCCCAGACACAGAACAGCC
Band lengths:
169-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]