GgaEX0003140 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr23:4301957-4304483:-
Coord C1 exon
chr23:4304332-4304483
Coord A exon
chr23:4303491-4303602
Coord C2 exon
chr23:4301957-4302205
Length
112 bp
Sequences
Splice sites
3' ss Seq
TCCTTTTTTTTCTCTCGTAGTAC
3' ss Score
9.11
5' ss Seq
ATGGTAGGA
5' ss Score
6.66
Exon sequences
Seq C1 exon
TTCGTCCTGTGAAACTCAAGGAGGACATTCTCTCGTGCACTTTTGCTGAGCTGAGTTTTGGCCTGTGCCAGTTTATTCAAGAGGTGCGGAGACCGAATGGAGAAAAATATGATCCTGACAGCATCTTATATTTGTGCCTTGGAATTCAGCAG
Seq A exon
TACCTGTTTGAGAATGGTAGAATAGATAACATTTTTACCGAGCCCTATTCCAGGTTTATGATTGAACTTACAAAACTTTTGAAAATCTGGGAACCTACAATTCTTCCAAATG
Seq C2 exon
GTTATATGTTCTCAAGAATAGAAGAGGAACACTTGTGGGAATGTAAACAGCTGGGTGCATATTCCCCCATAGTTTTACTGAACACACTGCTATTCTTCAACACCAAATACTTTCAACTAAAGAATGTCAGTGAGCACCTGAAGCTGTCCTTTGCCCACGTCATGAGACGGACCCGGACTCTGAAGTATAATACTAAGACAACATATTTACGTTTTTTCCCACCCTTTCAAAAACAAGAGGTAGAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002499_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF120123=DUF3504=PU(0.1=0.0)
C2:
PF120123=DUF3504=PU(47.7=98.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCTGAGTTTTGGCCTGTG
R:
CAGCTTCAGGTGCTCACTGAC
Band lengths:
252-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]