RnoEX0102057 @ rn6
Exon Skipping
Gene
ENSRNOG00000012397 | Zmym4
Description
zinc finger MYM-type containing 4 [Source:RGD Symbol;Acc:1309545]
Coordinates
chr5:144884364-144891993:-
Coord C1 exon
chr5:144891842-144891993
Coord A exon
chr5:144885819-144885930
Coord C2 exon
chr5:144884364-144884615
Length
112 bp
Sequences
Splice sites
3' ss Seq
TTCCTTCTTTTATCTTTTAGTAC
3' ss Score
9.93
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
Exon sequences
Seq C1 exon
TCCGCTCTATGAAACTGAAGGAAGATATTCTGTCCTGCACTTTTTCTGAGCTGAGTCTGGGCTTATGCCAGTTTATCCAAGAGGTGCGGAGACCCAATGGTGAAAAGTATGACCCAGACAGCATCTTATACCTGTGCCTTGGAATTCAGCAG
Seq A exon
TACCTGTTTGAAAATGGTAGAATAGATAACATTTTTACGGAGCCCTATTCCAGATTTATGATTGAACTTACCAAACTCTTGAAAATATGGGAGCCTACAATACTTCCTAATG
Seq C2 exon
GTTACATGTTCTCCCGCATCGAAGAAGAGCACCTGTGGGAGTGTAAGCAGCTGGGTGCCTACTCGCCCATTGTCCTGTTGAACACCCTCCTGTTTTTCAATACCAAATACTTCCAACTGAAGAATGTCACCGAGCACTTGAAGCTCTCCTTTGCCCACGTGATGAGGCGGACCAGGACTCTGAAGTACAGTACCAAGATGACGTACCTGAGGTTCTTCCCGCCGCCGCCACAGAAGCAAGAGTCGGAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012397_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.059
Domain overlap (PFAM):
C1:
NO
A:
PF120123=DUF3504=PU(0.1=0.0)
C2:
PF120123=DUF3504=PU(48.0=98.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGAGCTGAGTCTGGGCTT
R:
GCTTCAAGTGCTCGGTGACAT
Band lengths:
253-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]