DreEX6054090 @ danRer10
Exon Skipping
Gene
ENSDARG00000056922 | ltbp1
Description
latent transforming growth factor beta binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-091202-8]
Coordinates
chr17:23037199-23043694:+
Coord C1 exon
chr17:23037199-23037366
Coord A exon
chr17:23038680-23038895
Coord C2 exon
chr17:23043608-23043694
Length
216 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTCCTTCACTCATAGCTG
3' ss Score
8.84
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
CCGAAACACCTGCTCTTCGCGAGGAGAAGGGTGCTTGCTTCCGGTTTGTCGGTTCAGGGAAGCAGTGCTTGCACCCTGTGTCCACTCAGCTGAGTAAACAGTTATGCTGTTGTAGTGTGGGCAAGGCCTGGGGTCCTCATTGTGACCGCTGTCCTCTACCTGGGACAG
Seq A exon
CTGCGTTTAAAGACATTTGTCCTGGAGGTATGGGTTACCACGTCACCCCACCATACATTTACAAGCCCAAACCTCCTAATGGACACACTCAGACAGACAGTCAGGGGTACAACAATCCCACCATCAGACACCAAGTCCCTATGGATCCTCCAGTGCCCTTCCCCACCCTCCAGCAGCCCGTGGAGGCTCTGAGCATCACAGAGAGACAGCTGCCTG
Seq C2 exon
AGGTGGTGGAGAAAGTGTCACCACCGGCTCCAGTGGCAATTCCACCTTCCAATGAAGGTCAGGACATTACCCCAACACAGCTGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056922-'11-15,'11-12,12-15=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.661 C2=0.867
Domain overlap (PFAM):
C1:
PF0068312=TB=PU(85.7=63.2)
A:
PF0068312=TB=PD(11.9=6.8)
C2:
PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACACCTGCTCTTCGCGAG
R:
AGCCAGCTGTGTTGGGGTAAT
Band lengths:
252-468
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]