GgaEX0028498 @ galGal3
Exon Skipping
Gene
ENSGALG00000010448 | LTBP1
Description
NA
Coordinates
chr3:32437172-32442155:-
Coord C1 exon
chr3:32441988-32442155
Coord A exon
chr3:32439157-32439390
Coord C2 exon
chr3:32437172-32437194
Length
234 bp
Sequences
Splice sites
3' ss Seq
TTTTCCCATCCCAAATCTAGCTG
3' ss Score
7.36
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
CTGATAGTCCTATCGTTGCTGAAGAGAAAGGACCCTGCTACCGGTTTGTTAGTGCAGGAAAGCAATGCATGCATCCTCTTTCTGTGCAGCTCAGCAAGCAGCTTTGCTGTTGCAGTGTTGGAAAAGCCTGGGGCCCAAACTGTGAGAAGTGCCCCCTTCCAGGAACAG
Seq A exon
CTGCTTTTAAGGAAATCTGCCCTGGTGGAATGGGTTATACGGTTTCTGGCCCTCACAGAAACAAGCTATATCATCACCCTGCAGTTAGAGTACAGCCACCTGTCATTGGCAAGACCCCGATTACTCAACCTGTTGCTAAAGGTACTTCTCCTCCACCTCTCCCAGCAAAGGAAGAGCCGGTGGAGGCACTGACCTTCTCACAGAAAAGTGAGCCTGACATGGCTGTGCAAGAAG
Seq C2 exon
TGGCAACTGCAGCCCCTGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010448_CASSETTE2
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.506 C2=0.500
Domain overlap (PFAM):
C1:
PF0068312=TB=PU(85.7=63.2)
A:
PF0068312=TB=PD(11.9=6.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATAGTCCTATCGTTGCTGA
R:
CTGATCAGGGGCTGCAGTTG
Band lengths:
191-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]