MmuEX6079397 @ mm9
Exon Skipping
Gene
ENSMUSG00000001870 | Ltbp1
Description
latent transforming growth factor beta binding protein 1 [Source:MGI Symbol;Acc:MGI:109151]
Coordinates
chr17:75673207-75678314:+
Coord C1 exon
chr17:75673207-75673374
Coord A exon
chr17:75675736-75675963
Coord C2 exon
chr17:75678292-75678314
Length
228 bp
Sequences
Splice sites
3' ss Seq
TTTTCCCATCCCAAATCTAGCTG
3' ss Score
7.36
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CGGATCCCCCTGTGATCTCAGAAGAGAAAGGGCCCTGTTACCGCCTTGTCAGTCCTGGAAGGCATTGTATGCACCCTCTCTCTGTTCATCTCACCAAGCAGATCTGCTGTTGTAGTGTGGGCAAGGCCTGGGGCCCACATTGTGAGAAATGTCCCCTCCCAGGCACAG
Seq A exon
CTGCTTTTAAGGAAATCTGTCCTGGTGGAATGGGTTATACGGTTTCTGGCGTTCATAGACGCAGGCCAATCCATCAGCATATAGGTAAAGAAGCTGTATATGTCAAGCCAAAGAACACTCAACCTGTTGCTAAAAGTACTCATCCTCCACCTCTCCCAGCCAAGGAAGAGCCTGTGGAGGCCCTGACCTCCTCGTGGGAACACGGGCCGAGAGGGGCGGAGCCCGAAG
Seq C2 exon
TGGTAACAGCACCTCCTGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001870-'12-17,'12-15,13-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.704 C2=1.000
Domain overlap (PFAM):
C1:
PF0068312=TB=PU(85.7=63.2)
A:
PF0068312=TB=PD(11.9=6.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCCCCCTGTGATCTCAGA
R:
TCTCAGGAGGTGCTGTTACCA
Band lengths:
188-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: