BtaEX0020864 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019839 | LTBP1
Description
Bos taurus latent transforming growth factor beta binding protein 1 (LTBP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001103091]
Coordinates
chr11:15792413-15797703:+
Coord C1 exon
chr11:15792413-15792580
Coord A exon
chr11:15795292-15795519
Coord C2 exon
chr11:15797681-15797703
Length
228 bp
Sequences
Splice sites
3' ss Seq
TTTTCCCATCCCAAATCTAGCTG
3' ss Score
7.36
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
CGGACACCCCTGTGATCTCGGAAGAGAAAGGGCCGTGTTACCGACTGGTCAGTTCCGGAAGGCAGTGTATGCACCCTCTGTCTGTCCACCTCACCAAGCAGCTCTGCTGTTGTAGTGTGGGCAAGGCCTGGGGCCCGCACTGTGAGAAATGCCCCCTTCCAGGCACAG
Seq A exon
CTGCTTTTAAGGAAATCTGTCCTGGTGGAATGGGTTATACGGTTTCTGGCGTTCATAGACGCAGGCCAATCCATCACCATGTAGGTAAAGGACCTGTATTTGTCAAGCCAAAGAACACTCAACCTGTTGCTAAAAGTACTCATCCTCCACCTCTCCCAGCCAAGGAAGAACCAGTGGAGGCCCTGACCTTCTCCCGGGAACAGGGGCCAGGAGCGGTGGAGCCAGAAG
Seq C2 exon
TGGCAACTGTACCTCCTGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019839-'40-30,'40-27,41-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.769 C2=1.000
Domain overlap (PFAM):
C1:
PF0068312=TB=PU(85.7=63.2)
A:
PF0068312=TB=PD(11.9=6.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACACCCCTGTGATCTCGGAA
R:
TTCTCAGGAGGTACAGTTGCCA
Band lengths:
188-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development