DreEX6054093 @ danRer10
Exon Skipping
Gene
ENSDARG00000056922 | ltbp1
Description
latent transforming growth factor beta binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-091202-8]
Coordinates
chr17:23015725-23027895:+
Coord C1 exon
chr17:23015725-23015984
Coord A exon
chr17:23018943-23019045
Coord C2 exon
chr17:23027836-23027895
Length
103 bp
Sequences
Splice sites
3' ss Seq
GATTGTGTTTTATTTTGCAGTGT
3' ss Score
9.35
5' ss Seq
CATGTAAGC
5' ss Score
5.61
Exon sequences
Seq C1 exon
GTATGGTGAATGTCCATGTGAAACATCCTCCTGAAGCCTCGGTCCAGATTCATCAGGTGTCTCCAGTGGACAGTAATGGACAAGTGAAGAACACGCAGTCCAGCCATTCCTTCACCTACCACAGCAGCAGCCAGAGCATCCAGCATGGGCACACTCACAGTGGTGTCATTTACCCCAACCAGCAAACATACCTCCAATACCAGCCTGTCACATCCAAGAGCCAACTAGGACGCTGCTTCCAGGAGACTACCGGAATGCAG
Seq A exon
TGTGGGAAAGCTCTGCCTGGACTATCTAAACAGGATGCCTGTTGTGGGACGGTGGGCACATCATGGGGATTCCACAAATGCCAAAAATGCCCCAAGAAACCAT
Seq C2 exon
CGATTCCTTTGATTGAATGTCCTCAAGGCTATAAGAGACTGAATGGCACTCGCTGTATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056922-'7-9,'7-8,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.586 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0068312=TB=PU(2.6=1.1)
A:
PF0068312=TB=FE(89.5=100)
C2:
PF0068312=TB=PD(2.6=4.8),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGTCTCCAGTGGACAGTAA
R:
GCGAGTGCCATTCAGTCTCTT
Band lengths:
258-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]