MmuEX6079399 @ mm10
Exon Skipping
Gene
ENSMUSG00000001870 | Ltbp1
Description
latent transforming growth factor beta binding protein 1 [Source:MGI Symbol;Acc:MGI:109151]
Coordinates
chr17:75226967-75252415:+
Coord C1 exon
chr17:75226967-75227241
Coord A exon
chr17:75248894-75248996
Coord C2 exon
chr17:75252344-75252415
Length
103 bp
Sequences
Splice sites
3' ss Seq
CCTTTCACACTTCATTGCAGTGT
3' ss Score
6.84
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
TGAAATTCCCCCCCAACATAGTCAATATCCATGTGAAACATCCTCCCGAGGCTTCTGTCCAGATACACCAGGTTTCCAGGATTGACAGCCCAGGAGGCCAGAAGGTGAAGGAAGCCCAACCAGGCCAGTCCCAAGTCTCTTACCAAGGACTTCCGGTCCAGAAGACCCAGACAGTCCATTCTACGTACTCCCACCAGCAGCTTATTCCCCATGTGTATCCCGTGGCTGCTAAGACACAACTTGGCCGATGCTTCCAGGAAACCATTGGATCACAG
Seq A exon
TGTGGCAAAGCGCTCCCTGGCCTTTCCAAGCAAGAGGACTGCTGTGGGACAGTGGGGACGTCCTGGGGCTTTAACAAATGCCAGAAGTGCCCCAAGAAACAAT
Seq C2 exon
CCTATCATGGATATACTCAAATGATGGAATGCCTACAAGGATATAAACGGGTTAACAACACCTTTTGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001870-'19-22,'19-21,20-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.304 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0068312=TB=PU(2.3=1.1)
A:
PF0068312=TB=FE(77.3=100)
C2:
PF0068312=TB=PD(15.9=28.0),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGTGAAGGAAGCCCAACC
R:
ACAAAAGGTGTTGTTAACCCGT
Band lengths:
243-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types