RnoEX0051340 @ rn6
Exon Skipping
Gene
ENSRNOG00000033090 | Ltbp1
Description
latent transforming growth factor beta binding protein 1 [Source:RGD Symbol;Acc:68379]
Coordinates
chr6:21351085-21376832:-
Coord C1 exon
chr6:21376558-21376832
Coord A exon
chr6:21354501-21354603
Coord C2 exon
chr6:21351085-21351156
Length
103 bp
Sequences
Splice sites
3' ss Seq
TGTTTCACACCTCATTGCAGTGT
3' ss Score
6.32
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
TGAAATTTCCCCCCAACATAGTCAATATCCATGTGAAGCATCCTCCTGAGGCTTCTGTGCAGATACACCAGGTTTCCAGAATTGATGGCCCAGTGGGCCAGAGGGTGAAAGAAGTGCAACCGGGCCAGTCCCAAGTCTCTTACCAAGGGCTGCCCGTCCAGAAGACCCAGACAGTCCATTCCACATACTCCCACCAGCAGGTCATTCCGCATGTGTATCCCGTGGCTGCTAAGACACAACTTGGACGATGCTTCCAGGAAACCATTGGGTCACAG
Seq A exon
TGTGGCAAAGCGCTCCCTGGCCTTTCAAAGCAAGAGGACTGCTGTGGGACAGTGGGGACCTCCTGGGGCTTTAACAAATGCCAGAAATGCCCCAAGAAGCAAT
Seq C2 exon
CCTATCATGGATATACTCAAATGATGGAATGCCTACAAGGATATAAACGGGTTAACAACACCTTTTGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033090-'15-15,'15-14,16-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.228 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0068312=TB=PU(2.3=1.1)
A:
PF0068312=TB=FE(77.3=100)
C2:
PF0068312=TB=PD(15.9=28.0),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGTGAAAGAAGTGCAACCG
R:
ACAAAAGGTGTTGTTAACCCGT
Band lengths:
242-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]