DreEX6056200 @ danRer10
Exon Skipping
Gene
ENSDARG00000087780 | tiam2a
Description
T-cell lymphoma invasion and metastasis 2a [Source:ZFIN;Acc:ZDB-GENE-030219-98]
Coordinates
chr17:49008686-49019724:+
Coord C1 exon
chr17:49008686-49008768
Coord A exon
chr17:49013247-49014351
Coord C2 exon
chr17:49019244-49019724
Length
1105 bp
Sequences
Splice sites
3' ss Seq
GAATCTTTCTCTTGATCTAGATC
3' ss Score
7.92
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
AAAACCACAAGAGAACTGGACTGTAAGAGGGAGAAAATGATGGCTGTGCAGACAACGAGGCCATAAGAGGCCTGAATACACTG
Seq A exon
ATCTGGGATGGGAAACTCGGAGAGTCAGTATAGGATCCAGGGCACTAGAAGCAATAGCTTTATTATCCCTGACCGAGAGAAACCCTGTTCATTCAGCGTCCACTCCAGCAAAGAAGACGTTTTATCACCTTTAGGCTTTTGGAATGCTGGTTCAAGATTTTCTAGATTGAAATCCGGAAATGAAGGTGAAACTTCCTCCACGTCTAAGAGCAGCCGGGCGTTTATATCCCGCCAGTATGACTTCATCACCCAGAAACTAAAGAGTGGTAGTCAGTGGGATGAAGTTCCTGAGGACCTGTTGCCTGGTGGCTGCTTGATGTTGCCTTCGGAAAAGGACTGCTTGTATCGCAATCACAAGGAGAGGAGAAAAACATGTAATAAATATGCTCTTAATGCAATGAAGACACCTGAGAGAAGTCTCAGACTTGAGGACATTGAAGACCAGAGCAGCCCTAGGGTTGTCATAAAGAAAGATGGTAGCGTACGTGTGGAATTTAACAATAGTCCCAATAGTGCCCTTATTTTAAATAATTGCACTGAACCAGTTCAGCTCCTCAAATTTTCCCCCACCATGGAGTCCACTTGTGGTTTATCTGCTGCAGGACCCTCATTGGATTCTCATAATGGAGCAGCACAGGCAATGTCCAGCTTGAAAAGCAGCAAAGGTAGCTCTCTGAGCTCAGATGGCTCTTTGTACGACTTGCCTTGGAGGACCAGCGTCGAACTTAATGATTCAGACAATGCTTCTCCTGACCAGCAAAGGCAAACTGTTTCTACAAACACAGGCTTTTTTGATGAGCAGTTGCCAGCCATTACTACAACCGACCTCTACAGGGATCCCAGAATTGCTTCCACCTTCCCCACGGTCAAGGATTTGCAGTGTTCAAATGGCAGCCGTTCACACCACAGATCCTCCTTTGTGTCCGTGATGGAGGGACTCAGTTCAGAAGGGGTCCCAGAGGAACAGCAGTATTCCTCCTTCACCTTGCCTTGCCGGAAATCCAAAGCTTCTCCTGAAAATAATGGAAAGAAAGCGTCGATTAGGAGCAGATTTAGACGCATCAGTGACTGGACCGGAAGTCTGACCAGGAAAAAGAAGTTTCAG
Seq C2 exon
GAGCCCAGATATAACGAGCCGGTCGATTGCTTTGACAGCGGTGTGGATGGACTCACTGCAGATACCAGTTCCCCCTCTCAGGTCTCCAGCCTTATGGCTACCTCCAATGGCATGTCTCAATCCTGCTCTCTCTCTCGCTCGCTGCACAGCCGCAGTGGCTCTGCCGGAGCCCTTAATTTAGGAAATGACATTCTACGGCAAAACATCTACAAGAATTTTATGATGGAGTTAAAGACTGCCCGGCTTCCAGCAGAAAGAGGAGCTGAAGATTGGTGTGAGAGCTCCTCAGAGGAAACAGGAAGCAGTAGTCAAGAAATCCCGGGGTCTCTGGAGCAGCTGGATTTGCTGTTCGAGAAAGAACAAGGGGTAGTTAGGCGAGCTGGGTGGCTGTCCTTCAAGCCCTTGCTCACTGTACACAAGGACCGCAAACTGGAGCTAGTGAGCCGTCGAAAATGGAAGCAATTCTGGGTCACTCTCAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087780-'4-2,'4-1,5-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.426 C2=0.261
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0016924=PH=PU(32.7=23.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAGACAACGAGGCCATAA
R:
TGCTTCCTGTTTCCTCTGAGGA
Band lengths:
342-1447
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]