RnoEX6000760 @ rn6
Exon Skipping
Gene
ENSRNOG00000016728 | Tiam2
Description
T-cell lymphoma invasion and metastasis 2 [Source:RGD Symbol;Acc:2324148]
Coordinates
chr1:44328350-44337708:+
Coord C1 exon
chr1:44328350-44328465
Coord A exon
chr1:44329857-44331059
Coord C2 exon
chr1:44337273-44337708
Length
1203 bp
Sequences
Splice sites
3' ss Seq
TACAACTGTTCTCCGTTTAGGTT
3' ss Score
10.36
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GGCCACTTCATGGACTTTCCCTGCACACCTACACTTGTTAAATACCTGCTTTGTTCCCAAGACCATGTAAAACCCGCTGAGCATTAACCACCCTCCCAGCGAAAGCCAGGCTGCAG
Seq A exon
GTTAAGATGGGGAACTCCGAGAGTCAATATACCTTCCAAGGATCCAAGAATCAAAGCAATACTGTCACTGGTGCTAAGCAGAAGCCGTGCTCTCTGAAGATACGCAGCATTCATGCAAAAGATGAGAAGTCCTTGCATGGTTGGGCTCACGGGAGCGGCGGAGCAGGCTACAAGTCCAGATCCCTAGCCAGGAGCTGCCTTTCTCACTTTAAGAGTCACCAGCCTTACGCCACCAGACTCAATGGACCCACGTGTAAAGTCTCAAAGGGCACTGCCTACTCTAAGCACAGAGCAAATGCCCCAGGAAATGATTTTCAGGGCAACAATGGTGCTTTCTTACCCGAGAATGGCTTCCACTATGTTGGGCGCGAGTCAGGGGAGAGCCACATCACCTCCAGGGACTGCAATGGACACCTTCTCACCTGCTATGGGAGACACGACAGCATTGCCTCCACTCCTCCAGGTGAGGACCGCAGGAGCCCCAGGGTGCTCATCAAGACACTGGGGAAGCTAGATGGGTGTTTAAGAGTTGAGTTCCACAATGGCGGCAACCCCCACAAAGGGCCCTCAGAGGACCCCAGTGAACCTGTACAGCTGCTAAGATACTCCCCTACGTTAGCAGCGGAAACCTGCCCGGTGCCGGAAAGTAGGCGGCTTTCGGGTGCAGGCTCCTCAGCCAGCCAGCGCCCTTCTCCCACTGACTCTTGCCTGCGCTCCAGTAAAGGCAGCTCCCTGAGCTCGGAGTCCTCCTGGTATGACTCCCCCTGGGGCAACGCAGGGGAGGCGAGTGAAGTGGACGGCACCTTCCTGGCTCCCAGTGCTCTAGACCCCAGCCTCCCCAGCAGCTTCCCACCCAGTGACACCAAAAAGCCTTTCAACCAAAGCTCTTCCCTCTCCTCTCTCCGGGAACTGTACAAAGATGCCAACCTGGGGTGCCGCTCACCTTCCGGCACCTGCCTTTCTTCCAACGAGTACATTAGCTCCCAAGTCGGCCTGAACAACCGAGTCTCCTTTGCTTCTGACATGGATGTGCCCTCCAGGGTGGATCACAGGGACACCATGCAGTACAGCTCCTTTACTCTCCCGTGTCGCAAGTCCAAAGCCTTAACTGAGGATGCAGCTAAGAAAGACACCCTCAAAGCCAGAATGCGGCGCTTCAGTGACTGGACAGGAAGCCTTTCCAGGAAGAAGAGGAAATTGCAG
Seq C2 exon
GAACCCAGATCCACGGAGGGCAGTGAGTACTTCGATAGCCACTCGGATGGACTGAATGCAGATGTGCAGGGGCCCACGCAGACATCTGCCTTACTGTGGTCAGGGGGCTCAGCTCAGACCCTGCCTCACAGAAGCGAATCCACTCACGCAATCGGCAGCGATCCCCTCCAACAGAACATCTACGAGAATTTCATGCGAGAGCTGGAAATGAGCAGGACCAACATGGAGAACGCGGAAACGTCCACAGAGACTGTGGAGTCCAGCAGCGAGTCCCTCAGCTCGCTGGAGCAGCTGGATCTGCTCTTTGAGAAGGAGCAGGGGGTGGTCCGAAAAGCTGGGTGGCTCTTCTTCAAACCCCTTGTCACCTTGCAGAAGGAGAGGAAACTGGAGCTGGTGGCTCGGAGGAAGTGGAAACAGTACTGGGTGACCCTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016728-'6-5,'6-4,7-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.549 C2=0.486
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0016924=PH=PU(32.5=25.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCTGCACACCTACACTTGT
R:
CAGTCTCTGTGGACGTTTCCG
Band lengths:
352-1555
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]