MmuEX6074985 @ mm10
Exon Skipping
Gene
ENSMUSG00000023800 | Tiam2
Description
T cell lymphoma invasion and metastasis 2 [Source:MGI Symbol;Acc:MGI:1344338]
Coordinates
chr17:3412632-3421708:+
Coord C1 exon
chr17:3412632-3412750
Coord A exon
chr17:3413945-3415185
Coord C2 exon
chr17:3421273-3421708
Length
1241 bp
Sequences
Splice sites
3' ss Seq
AAAATCCTCTTTTATTGCAGTGT
3' ss Score
6.8
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GATCACTTCATGGATTTGCCTCACGTACCTATGTTTGTTAATTTCCTGTGTCGTTCCCAAGATCACGTAAAACCCTCTGAGCATTATTGACCTCCCTCCCAGCAAAAGCCAGGCTGCAG
Seq A exon
TGTAATTTAGACCATGGCTCATATTGATACAACTGTTCTCAATTTTGGTTAAAATGGGGAACTCCGAGAGTCAATATACCTTCCAAGGATCCAAGAATCATAGTAATACTGTCACTGGTGCTAAGCAAAAGCCTTGCTCTCTGAAAATACGCAGCGTTCATGCAAAAGACGAGAAGTCCTTACATGGTTGGACTCATGGGAGCAGCGGTGCAGGCTACAAGTCCAGGTCCCTAGCCCGAAGCTGCCTTTCTCACTTTAAGAATCACCAGCCTTACGCCACCAGACTCAGTGGACCCACATGTAAAGTCTCAAAGGGCACCACCTACTCTAAGCACAGAGCAAATACCCCGGGAAATGATTTCCAGGGCAACAGTGGTGCTTTCTTACCTGAGAATGGCTTCCACTATGTTGACCGCGAGTCAGAGGAAAGCCATATCACCTCCAATGGGCACCTTCTCACCTGCTATGGGAGAAAGGAAAGCCTCGCCTCCACTCCTCCAGGCGAGGACCACAGGAGCCCCAGGGTGCTCATCAAGACCCTGGGAAAGCTAGACGGGTGTTTAAGAGTCGAGTTCCACAACGGTGGCAACCCCCACAAGGGGACCTCCGAGGACCCCAGTGGACCTGTACGGCTGCTGAGATACTCCCCTACCTTAGCATCGGAAACCTGCCCGGTGCGGGAAACCAGGCGGCATTCCGCTGCAGGCTCCCCATCCAGCCAGCGGCCCTCTCCCACTGACTCTCGCCTGCGCTCCAGCAAAGGCAGCTCCCTGAGCTCAGAGTCATCCTGGTATGACTCCCCCTGGGGCAACGCTGGGGAGGTGAGCGAGGTGGAGGGCTCCTTCCTGGCTCCCAGCACTCCAGACCCCAGCCTCCCCAGCAGCTTCCCACCCAGTGACACCAAAAAGCCTTTCAACCAAAGCTCTTCCCTCTCCTCCCTCCGGGAATTGTACAAAGATCCCAACCTGGGGTGCCGCTCACCTTCCGGCACCTGCCTTTCTTCCAATGAGTACATCAGCTCTCAAGTCAGCCTGAACAACCGAGTCTCCTTTGCGTCTGACATGGATGTGCCCTCCAGGGTGGATCACAGGGATCCCCTGCACTATAGTTCCTTTACTCTCCCCTGTCGCAAGTCCAAAGCCTTAACTGAAGATGCAGCTAAGAAAGACACCCTCAAAGCCAGAATGCGGCGCTTCAGTGACTGGACAGGAAGCCTCTCCAGGAAGAAGAGGAAACTGCAG
Seq C2 exon
GAACCCAGGTCCATGGAGGGCAGTGAGTACTTTGATAGCCACTCAGATGGACTGAATGCAGAAGGGCAGGTGCCCGCGCAGACATCTTCCTTACTGTGGTCAGGGGGCTCGGCTCAGACCCTGCCTCACAGAAGCGAATCCACTCACGCTATCAGCGTCGATCCCCTCCGACAGAACATCTATGAGAATTTCATGCGAGAGCTCGAAATGAGCAGGAGCAACACAGAACACGTGGAAACTTCCACAGAGACCATGGAGTCCAGCAGCGAGTCTGTCAGCTCACTGGAGCAGCTGGATCTGCTCTTTGAGAAGGAGCAGGGAGTGGTCCGGAAAGCCGGGTGGCTCTTCTTCAAACCCCTTGTCACCTTGCAGAAGGAGAGGAAACTGGAGCTGGTGGCTCGGAGGAAGTGGAAACAATACTGGGTGACCCTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023800-'14-12,'14-10,19-12=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.644 C2=0.411
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0016924=PH=PU(32.5=25.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGACCTCCCTCCCAGCAAA
R:
CCCTGCTCCTTCTCAAAGAGC
Band lengths:
354-1595
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types