Special

GgaEX6030712 @ galGal3

Exon Skipping

Gene
Description
NA
Coordinates
chr3:52406735-52414435:+
Coord C1 exon
chr3:52406735-52406770
Coord A exon
chr3:52407422-52408621
Coord C2 exon
chr3:52414000-52414435
Length
1200 bp
Sequences
Splice sites
3' ss Seq
TGAAACTCTTCTTAATTTAGTGG
3' ss Score
5.27
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
CCAGTGTGCACTGTTCCCTGTGAATTCAGTAAAAAG
Seq A exon
TGGAAAATGGGAAATTCAGAAAGCCAATACAGTCTTCAGGGATCAAAAAATCATGCTGCTGCTTCAACTGGTTCCAAGCAGAAGCCTTGCTCTCTAAAAATTCGCAGCATTCATGCTAAAGATGAAAAGTCTTGCTCCCTGCATGGATGGGGACATACCAATAGTGGCTCAAACTACAAGTCAAGGTCTCTTGCTAGAAGCTGCCTTTCACACTTCAAGAGTAGCCAACCTTATTCAGCTAGACTCAGTGACACTGTGGTGAAGGCCTCTAAAAGTAACGTCCTTGCCAAACACAGGACACACACCTCAGGGGACTACTGTCCAGGAAATAATGCAGTGTTTTTGCCTGATAATGGTTTCCACTATATTGGCCTTCAAGCTGGAAGTAATCATGCTGCACCCCGAGATTGCAATGGGCACATTTTAAAATGCTATGGAAAGAATGAGAGTCTTGCATCAACCTCTCCATCAGAGGACAGGAGGAGTCCAAAAGTACTCATTAAAACACTGGGGAAGCTGGATGGTTGCTTGAGAGTCGAATTCCACAACAGTAGCAACAGCAAAGTACCAACTGAGGAGTCCAGTGGGCCAGTCCAGCTGCTGAGGTATTCACCTACCTTGGAATCTAAGTCAAATAACCTGCTAGATGTCAGGAGGAACTCCAGCGCAGACTGTTCTTCAAACCATCGTCTGTCACCTACTGATTCAAGGCTTCGATCTAGTAAGGGAAGCTCCCTAAGCTCCGAGTCTTCATGGTATGACTCTCTCTGGGGAAATGCTGGGGATATCAGTGAGTTGGATGGTCCATATTTGACTAGGAGCACTCCAGATACAAGCATTCATGCCAGTTTCCCAGCAAGTGACAAGAAATCCTTCAATCAAAGTTCATCTCTGTCCTCACTTCGAGATCTCTATAAGGATACAAATTTGGAAGGCACTCCTCCACCTGGGATCAGGCTGTCTGATGAGTATATTGACACTCATGGTAGCCTAAGCAACCGTGTATCATTTGCTTCAGACATTGATGTTCCCTCCAGGGTAGAGCAGGGAAGTCCTGCTCATTATTCCTCTTACACTCTCCCATGTAGAAAGTCCAAGCCACTCGCTGAGGATGCATCCAAGAAGGACACATTAAAAAGCCGCATGAGGCGCATCAGCGATTGGACAGGAAGTCTCTCGAGGAAGAAAAGGAAGTTGCAG
Seq C2 exon
GAACCCAAATGTAAAGATGGGAGCGAATACTTTGACAGCAGAATGGACAACTTCAGCACAGACACGCTGGCACCATCACAGCAGTCTACTTTGTTGTGGTCACCCAGCTCCAGTCACATCCTGTCCCAGAGAAGTGAGTCCACCAATGCAGTCAGCAGTGATGCCCTGAGGCAGAACATTTATGAAAACTTCATGCGGGAGCTGGAGATGAGCAGGACAAACCTGGAGAACACTGAGACCTCATCAGAAACGGAGGACTCCAGCAGTGAGTCTCTCAGCTCCTTGGAGCAACTGGATTTGTTGTACGAGAAGGAGCAAGGAGTGGTGCGCAAAGCAGGGTGGCTGTTCTTCAAACCACTGGTGACCCTGCAGAAAGAGAAGAAGCTGGAGCTGGTCACACGGCGAAAGTGGAAGCAGTACTGGGTAACACTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013645-'1-3,'1-0,2-3=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.455 C2=0.281
Domain overlap (PFAM):

C1:
NO
A:
NO
C2:
PF0016924=PH=PU(32.5=25.3)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:


Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGCACTGTTCCCTGTGAA
R:
CCACTCCTTGCTCCTTCTCGT
Band lengths:
358-1558
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]