DreEX6056654 @ danRer10
Exon Skipping
Gene
ENSDARG00000028824 | slc34a1a
Description
solute carrier family 34 (type II sodium/phosphate cotransporter), member 1a [Source:ZFIN;Acc:ZDB-GENE-101006-3]
Coordinates
chr14:826787-828888:-
Coord C1 exon
chr14:828693-828888
Coord A exon
chr14:828273-828368
Coord C2 exon
chr14:826787-826904
Length
96 bp
Sequences
Splice sites
3' ss Seq
TGGTGTTTTTTTTCTTCCAGCTG
3' ss Score
10.32
5' ss Seq
GTGGTAACA
5' ss Score
3.31
Exon sequences
Seq C1 exon
GGCATTTGCGGGAGCAACGATCCACGACTGTTTTAACTGGCTGTCTGTGCTGGTTCTGCTGCCGCTGGAGGTGTTTTCGGGTCTGCTCAGTTTTCTGGCCAGAGTGACGGTCAGCAGCTTTCAGATGCACAGCGGAGAGGAAGCTCCAGAGCTGCTCAAGACCCTCACTGAGCCCTTCACCACACTCATCATACAG
Seq A exon
CTGGATAAATCCGTCATCACAGGCATTGCTCTGGGCGACGAGTCCATGCGGAATCACAGCCTCATCAAAGTCTGGTGCAAGTCCTCCGTCTTGGTG
Seq C2 exon
TCCTCGGTGAATGTGACGCATGCGGCCGTACGAAACTGCACTGGACTGCACTGTGGGAGGGATGGAGACCTGACCTGGATCACTCAGAATATCACCACACACATCAACACGGAGAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028824-'9-7,'9-6,11-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=PD(31.3=71.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGTCAGCAGCTTTCAGATG
R:
GTGATCCAGGTCAGGTCTCCA
Band lengths:
173-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]