HsaEX6101410 @ hg19
Exon Skipping
Gene
ENSG00000131183 | SLC34A1
Description
solute carrier family 34 (sodium phosphate), member 1 [Source:HGNC Symbol;Acc:11019]
Coordinates
chr5:176814995-176820764:+
Coord C1 exon
chr5:176814995-176815190
Coord A exon
chr5:176815278-176815373
Coord C2 exon
chr5:176820695-176820764
Length
96 bp
Sequences
Splice sites
3' ss Seq
TGCCCACATCTTGCCCACAGCTG
3' ss Score
9.48
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GGCCTTCGCGGGGGCCACGGTGCATGACTGCTTTAACTGGCTGTCAGTGCTGGTCCTGCTGCCCCTGGAGGCTGCCACTGGCTACCTGCACCACATCACTCGACTTGTGGTGGCCTCCTTCAACATCCATGGTGGCCGTGATGCTCCTGACCTGCTCAAGATCATCACAGAGCCCTTCACGAAGCTCATCATCCAG
Seq A exon
CTGGACGAGTCTGTGATAACCAGCATTGCCACTGGTGATGAGTCCCTGAGGAACCACAGTCTCATCCAGATCTGGTGCCACCCAGACTCCTTACAG
Seq C2 exon
GCTCCCACCTCCATGTCCAGAGCAGAGGCCAACTCCAGCCAGACCCTTGGAAATGCCACCATGGAGAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000131183-'8-12,'8-9,9-12=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.125
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=PD(28.5=62.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACCTGCACCACATCACTC
R:
CATTTCCAAGGGTCTGGCTGG
Band lengths:
171-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)