RnoEX6053064 @ rn6
Exon Skipping
Gene
ENSRNOG00000015262 | Slc34a1
Description
solute carrier family 34 member 1 [Source:RGD Symbol;Acc:3708]
Coordinates
chr17:9753375-9759363:-
Coord C1 exon
chr17:9759168-9759363
Coord A exon
chr17:9758966-9759061
Coord C2 exon
chr17:9753375-9753438
Length
96 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTCTCTCTCTCTCAGCTG
3' ss Score
11.54
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GGCTTTTGCAGGGGCAACAGTGCATGACTGCTTTAACTGGCTGTCTGTTCTGGTCCTGCTGCCCCTGGAGGCTGCCACGGGCTACCTGCACCACGTCACCGGGCTTGTGGTTGCCTCCTTCAACATCCGTGGTGGCCGTGATGCCCCTGACCTTCTCAAGGTTATCACAGAGCCCTTCACAAAGCTTATCATCCAG
Seq A exon
CTGGACAAGTCTGTGATTACCAGCATTGCCGTGGGGGATGAGTCCCTGAGGAATCACAGTCTCATTCGGATTTGGTGTCAACCAGAGACAAAAGAG
Seq C2 exon
GCTTCCACTTCTATGTCCAGGGTAGAGGCCATTGGCAGCCTTGCAAACACCACCATGGAGAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015262-'12-21,'12-15,13-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=PD(29.0=63.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCTGTTCTGGTCCTGCTG
R:
CCCTGGACATAGAAGTGGAAGC
Band lengths:
178-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]