GgaEX6011247 @ galGal3
Exon Skipping
Gene
ENSGALG00000003075 | SLC34A1
Description
NA
Coordinates
chr13:10214821-10215555:+
Coord C1 exon
chr13:10214821-10215016
Coord A exon
chr13:10215223-10215318
Coord C2 exon
chr13:10215486-10215555
Length
96 bp
Sequences
Splice sites
3' ss Seq
CCTCCAATGTGCTCTTGCAGCTG
3' ss Score
10.08
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GGCTTTTGCTGGTGCTACAGTGCACGACTGTTTCAACTGGCTGTCAGTGTTGGTCCTGCTTCCGCTGGAGGTGGTGAGTGGGTACCTGCACCACGTCACCCGCCTGGTGGTGGCCACCTTCAACATCCGCAGTGGGAAGGATGCCCCTGCCCTGCTGAAAATCATCACGGAGCCCTTCACCAAACTCATCATCCAG
Seq A exon
CTGGACAAGTCGGTGATCACAGGCATTGCGACAGGGGATGAGAGCCTGCGCAACCGCAGCCTCATCCGCATGTGGTGCGGCCCCGCACCTCCCCAG
Seq C2 exon
AACTGCACGGCTTCTGGACATTGCAGCAGTAATGGCATTGGGATCCTCCACAACGTCACCAGGCAGAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003075-'9-15,'9-12,10-15=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=PD(28.5=62.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGGTGGTGAGTGGGTAC
R:
TCCCAATGCCATTACTGCTGC
Band lengths:
175-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]