DreEX6058229 @ danRer10
Exon Skipping
Gene
ENSDARG00000037101 | mtmr7a
Description
myotubularin related protein 7a [Source:ZFIN;Acc:ZDB-GENE-060421-7754]
Coordinates
chr14:30068950-30069527:+
Coord C1 exon
chr14:30068950-30068999
Coord A exon
chr14:30069091-30069291
Coord C2 exon
chr14:30069393-30069527
Length
201 bp
Sequences
Splice sites
3' ss Seq
TTTACTTTATGGCTTTACAGATG
3' ss Score
9.07
5' ss Seq
GCGGTAACT
5' ss Score
6.77
Exon sequences
Seq C1 exon
GTGCTGATTGAGAAAGACTGGGTTTCATTTGGACACAAGTTTTCACACAG
Seq A exon
ATGCGGTCACCTAGACGGAGAAGCCAAAGAAGTGTCTCCTGTTCTAGACCAGTTTCTGGAATGTGTATGGCAGCTTATGGACCAGTTTCCCTGCGCTTTTGAGTACAATGAGAAGTTTCTAATCAGCATCCACAACCACGTTTACTCCAGCCACTACGGCAACTTCATTTGTAACAGCCAGAAGGAGAGGAAAGATCTGCG
Seq C2 exon
CATCAAAGAGAAAACTCACTCCATATGGCCTTATTTAATGGAGAACAAGCTGGACTTCATGAACCCTCTGTTCAAACCTGATCAGATCCAGAATCAGGGACTTTTAAGGCCTAGCACTGCCCCCTACTGTTTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037101-'11-11,'11-10,12-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(4.7=100)
A:
PF066029=Myotub-related=PD(19.2=97.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTGATTGAGAAAGACTGGGT
R:
AAACAGTAGGGGGCAGTGCTA
Band lengths:
182-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]