MmuEX6035398 @ mm9
Exon Skipping
Gene
ENSMUSG00000039431 | Mtmr7
Description
myotubularin related protein 7 [Source:MGI Symbol;Acc:MGI:1891693]
Coordinates
chr8:41641799-41646260:-
Coord C1 exon
chr8:41646211-41646260
Coord A exon
chr8:41643510-41643710
Coord C2 exon
chr8:41641799-41641886
Length
201 bp
Sequences
Splice sites
3' ss Seq
TAGAATACTTTGTTTTATAGATA
3' ss Score
5.85
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GTATTAATTGAAAAGGACTGGATTTCCTTCGGACATAAATTTAATCATAG
Seq A exon
ATATGGCAACTTAGATGGTGACCCAAAAGAAATCTCTCCAGTAATCGACCAGTTCATTGAGTGTGTCTGGCAGCTAACGGAACAGTTCCCTTGCGCCTTTGAGTTCAACGAGAGGTTTCTGACTCACATTCAGCATCATGTTTATTCCTGCCAGTTTGGGAACTTCCTGTGTAATAGCCAGAAGGAGAGGCGAGAACTCAA
Seq C2 exon
TGAGAATGGAAAAAGCAAAAAGGGTTCACGGTTCCTTAAGGAGGACTCCTGAGGTTGAAGGCTAGCCTGTGTTGAAACCACAGCATAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039431-'15-12,'15-11,16-12=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.010 C2=0.176
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(4.7=100)
A:
PF066029=Myotub-related=PD(19.2=97.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTAATTGAAAAGGACTGGATTTCCT
R:
GCTGTGGTTTCAACACAGGCT
Band lengths:
132-333
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: