GgaEX6035379 @ galGal4
Exon Skipping
Gene
ENSGALG00000013641 | MTMR7
Description
myotubularin related protein 7 [Source:HGNC Symbol;Acc:HGNC:7454]
Coordinates
chr4:62732477-62735258:+
Coord C1 exon
chr4:62732477-62732526
Coord A exon
chr4:62734003-62734203
Coord C2 exon
chr4:62735118-62735258
Length
201 bp
Sequences
Splice sites
3' ss Seq
TGTTTCTTGTCTTGCATTAGGTA
3' ss Score
8.81
5' ss Seq
GAAGTAAGA
5' ss Score
6.42
Exon sequences
Seq C1 exon
GTTTTAATTGAAAAAGACTGGGTTTCCTTTGGTCACAAATTTAACCACAG
Seq A exon
GTATGGCAATTTAGATGGAGATCCAAAGGAGATATCCCCTGTTATTGACCAGTTCCTCGAGTGTGTCTGGCAGCTAATGGAACAGTTTCCTTGTGCCTTTGAGTTCAATGAGAGATTCTTGATCCACATACAGCACCACATCTATTCCTGCCAGTTTGGTAACTTCCTGTGTAACAGCCAGAAGGAGAGACGAGAGCTGAA
Seq C2 exon
AATCCAAGAACGAACATATTCACTGTGGGCTCATCTGTGGAAAAATCGTGCAGATTACCTGAATCCTTTGTACAGACCAGACCACAGGCAAATCTGGGGGACCCTGCACCCACAGATGGCTCCATGCAACTTCTTGTACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013641-'20-17,'20-16,21-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(4.7=100)
A:
PF066029=Myotub-related=PD(19.2=97.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTAATTGAAAAAGACTGGGTTTCCT
R:
TGTACAAGAAGTTGCATGGAGCC
Band lengths:
188-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]