RnoEX6055670 @ rn6
Exon Skipping
Gene
ENSRNOG00000011420 | Mtmr7
Description
myotubularin related protein 7 [Source:RGD Symbol;Acc:1306608]
Coordinates
chr16:54845985-54850195:+
Coord C1 exon
chr16:54845985-54846034
Coord A exon
chr16:54848404-54848604
Coord C2 exon
chr16:54850112-54850195
Length
201 bp
Sequences
Splice sites
3' ss Seq
TACGATACTTTGTTTTATAGATA
3' ss Score
7.33
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GTGTTAATTGAAAAGGACTGGATTTCCTTTGGACATAAATTTAATCATAG
Seq A exon
ATATGGCAATTTAGACGGTGACCCAAAAGAAATCTCTCCAGTAATTGACCAGTTCATCGAGTGTGTCTGGCAGTTAATGGAACAGTTCCCTTGCGCCTTTGAGTTCAATGAGAGGTTTTTGATTCACATTCAACATCATGTTTACTCCTGCCAGTTTGGGAACTTCCTGTGTAATAGCCAGAAGGAGAGACGAGAACTCAA
Seq C2 exon
TGAGAATGGAAAAAGGGTTCACAGTTCCTGAAGGAGGCTCCCGAGGTTGAATGCTGGCCTTTGATGAAGCTATAGCATGCCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011420-'25-22,'25-21,26-22=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.010 C2=0.800
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(4.7=100)
A:
PF066029=Myotub-related=PD(19.2=97.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTAATTGAAAAGGACTGGATTTCC
R:
TCAGGCATGCTATAGCTTCATCA
Band lengths:
133-334
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]