DreEX6059548 @ danRer10
Exon Skipping
Gene
ENSDARG00000044954 | slit1a
Description
slit homolog 1a (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030722-3]
Coordinates
chr13:442561-444870:-
Coord C1 exon
chr13:444738-444870
Coord A exon
chr13:442726-442794
Coord C2 exon
chr13:442561-442632
Length
69 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTGTGTGTGCAGGTA
3' ss Score
10.38
5' ss Seq
GGTGTAGGT
5' ss Score
2.21
Exon sequences
Seq C1 exon
ATCATGAGGACGTGAGCTGTGCGCCGCCGGTCCACTGTCCTGCTGACTGCACCTGTCTGGAGTCTGTGGTTCGCTGCAGCAACAAACACCTGCAAGCTTTACCCAAAGGCATCCCACGCAACATCACCGAACT
Seq A exon
GTATCTGGATGGGAACCAGCTGAGCACGGTGCCAAAGGAGCTGTCGTCCTTCAAGAGTCTGCAGCTGGT
Seq C2 exon
AGATTTGAGCAACAACAGGATCAGCTCTCTGACCAACTCCTCCTTCACCAACATGAGCCAGCTGACCACACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044954-'23-24,'23-23,24-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0146213=LRRNT=WD(100=62.2),PF127992=LRR_4=PU(10.9=11.1)
A:
PF127992=LRR_4=FE(50.0=100)
C2:
PF127992=LRR_4=PD(37.0=68.0),PF138551=LRR_8=PU(8.2=20.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCATGAGGACGTGAGCTGTG
R:
GGAGGAGTTGGTCAGAGAGCT
Band lengths:
176-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]