GgaEX6040736 @ galGal3
Exon Skipping
Gene
ENSGALG00000007622 | Q8QGG9_CHICK
Description
NA
Coordinates
chr6:23835830-23837015:+
Coord C1 exon
chr6:23835830-23835962
Coord A exon
chr6:23836672-23836740
Coord C2 exon
chr6:23836944-23837015
Length
69 bp
Sequences
Splice sites
3' ss Seq
TGCTTTCCTTCCCTTTCCAGCTA
3' ss Score
11.88
5' ss Seq
GGTGTAAGT
5' ss Score
8.07
Exon sequences
Seq C1 exon
GTCAGGAGGAGACGAGTTGCATCCCACGGCCTCAGTGCCCTCAGGAGTGCACCTGCCTTGACACCGTGGTGCGCTGCAGCAACAAGCACCTCAAGGCCCTGCCCAGGGGTATCCCCAAGAATGTCACCGAGCT
Seq A exon
CTACCTGGATGGAAACCAGTTCACCCAGGTGCCGGGTCAGCTCTCCACCTTCAAGTACCTGCAGCTGGT
Seq C2 exon
CGATCTGAGCAACAACAGGATCAGCTCACTGAGCAACTCCTCCTTCACCAACATGAGCCAGCTCACCACCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007622-'22-25,'22-24,23-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0146213=LRRNT=WD(100=62.2),PF127992=LRR_4=PU(11.6=11.1)
A:
PF127992=LRR_4=FE(53.5=100)
C2:
PF138551=LRR_8=FE(39.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGAGGAGACGAGTTGCAT
R:
TGGTGAAGGAGGAGTTGCTCA
Band lengths:
182-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]